PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G27850.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 298aa    MW: 32038.5 Da    PI: 4.3464
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G27850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.86e-25114174159
                   ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                   +dD + WrKYGqKe+k+s++pr YYrC+++   gCp++k++++s++dp+ ++itY geH+++
  OB05G27850.1 114 MDDNFLWRKYGQKEIKNSKYPRFYYRCSYKddhGCPATKQIQQSETDPS-FDITYFGEHTCR 174
                   58***************************99999***********9997.79********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081118.865109171IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-24110174IPR003657WRKY domain
SuperFamilySSF1182909.29E-23111174IPR003657WRKY domain
SMARTSM007746.3E-35114175IPR003657WRKY domain
PfamPF031062.8E-24115174IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MAHTMALAAG ELNALPTQLV TEGRESAARL HDLLIGCVQA TAAGSTGSST LYDTVALAEQ  60
ILLCFDCALA KLHAVAAGAE EDDAAARSGG ERKTERRASN GGGNGGRVQR KATMDDNFLW  120
RKYGQKEIKN SKYPRFYYRC SYKDDHGCPA TKQIQQSETD PSFDITYFGE HTCRPGNDDA  180
AAAIVDSSEE LSAAQLVISF ANSSGDASVC WPCSGDDARI KSDSSQDSSL PCTVNVYDEP  240
IMESTPPVPG LPDLKPMDGF LLDGESLFDM DELIYFHELS AALGLLDRDD GAPVQSYR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-20114174869OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G27850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1447379e-62AC144737.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0018K15, complete sequence.
GenBankAK2886919e-62AK288691.1 Oryza sativa Japonica Group cDNA, clone: J090060J18, full insert sequence.
GenBankAP0149619e-62AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126139e-62CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692635.10.0PREDICTED: probable WRKY transcription factor 62
TrEMBLJ3M8610.0J3M861_ORYBR; Uncharacterized protein
STRINGOB05G27850.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46632667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-21WRKY DNA-binding protein 70