PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G37010.1
Common NameLOC102710402
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 117aa    MW: 12577.4 Da    PI: 8.5239
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G37010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC1024.1e-322211219100
         NF-YC  19 helPlarikkilkade....d.....vkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100
                   h+lPlarikki+k              +mis eaPv++skacelfi elt r+w  + e krrt++k d+aaav++td fdflvd+v  d+
  OB04G37010.1  22 HALPLARIKKIMKRSAgessGvdgggARMISGEAPVVFSKACELFIAELTRRAWAATLEGKRRTVHKEDVAAAVQNTDLFDFLVDVVMADD 112
                   99***********753222212222369***********************************************************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.02E-2518104IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.5E-311996IPR009072Histone-fold
PfamPF008082.1E-162495IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MRQARPYSAM FAGGVSARTG PHALPLARIK KIMKRSAGES SGVDGGGARM ISGEAPVVFS  60
KACELFIAEL TRRAWAATLE GKRRTVHKED VAAAVQNTDL FDFLVDVVMA DDHDAMD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C3e-252210840117HapE
4g92_C3e-252210840117HapE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126121e-159CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankAL7323451e-159AL732345.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0306F12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006653894.13e-81PREDICTED: nuclear transcription factor Y subunit C-2-like
SwissprotQ8LCG74e-31NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
SwissprotQ9ZVL34e-31NFYC3_ARATH; Nuclear transcription factor Y subunit C-3
TrEMBLJ3M2S63e-81J3M2S6_ORYBR; Uncharacterized protein
STRINGOB04G37010.19e-81(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116583339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.29e-30nuclear factor Y, subunit C2