PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G30880.1
Common NameLOC102706837
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 465aa    MW: 51635.9 Da    PI: 5.0441
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G30880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.6e-11265311354
                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   +a+ + Er RR+++N +f +Lr l P++     +K++ a+i+  A+eYI +L
  OB04G30880.1 265 KANFATERERREQLNVKFRTLRMLFPNP-----TKNDRASIVGDAIEYIDEL 311
                   68899***********************.....9***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.675262311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.08E-8263316No hitNo description
PfamPF000101.1E-8265311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.33E-12267330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-8268317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-10269325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MISGAGYFED SHDQRLMAGA LIHDSNQAPA SGENTSIDLQ KFKVHSYSTE ALSNTTNLAE  60
AARAINHLQH QLEIDLEQEV SPVETANWDP SICTIPDNII NQFSGGPQNI LVEQQIQQYD  120
SALYPNGVYT PAPDLLNLMQ CTMAPAFPAT TPVFGDTTLN GTNYLDLNGE LTGMAAVPDS  180
GSELMFASDS ALQLGYHGTQ SHLIKDICHS LPQNYGLFPS EDERDVIIGV GSVGGDLFQD  240
IDDRQFDSVL ECRRGKGEYG KVKGKANFAT ERERREQLNV KFRTLRMLFP NPTKNDRASI  300
VGDAIEYIDE LNRTVKELKI LVEQKRHGNN RRKMVKLDQE AAGDGESSST KTLRDDLDNQ  360
LHGAIRSSWV QRRSKECHVD VRIVDDEVNI KLTEKKKTNS LLHAAKVLDE FQLELIHVVG  420
GIIGDHHIFM FNTKVSEGSA VYACAVAKRL LQAVEMQHQA IDIFN
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development (PubMed:23519457, PubMed:23385589). Interacts with TDR and promote tapetal PCD by regulating the expression of RTS, and the two lipid-transfer proteins C4 and C6, which function in microspore development (PubMed:23519457). Acts downstream from and interacts with TDR in the regulation of tapetal PCD. Regulates directly the aspartic protease AP25 and AP37 during tapetal PCD (PubMed:23385589). May not target the cysteine protease CP1 (PubMed:23519457, PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G30880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1195090.0AK119509.1 Oryza sativa Japonica Group cDNA clone:001-134-F08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652751.10.0PREDICTED: transcription factor bHLH91-like
RefseqXP_015691323.10.0PREDICTED: transcription factor bHLH91-like
SwissprotQ7X8R00.0EAT1_ORYSJ; Transcription factor EAT1
TrEMBLJ3M1130.0J3M113_ORYBR; Uncharacterized protein
STRINGOB04G30880.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.21e-56bHLH family protein