PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G30380.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 238aa    MW: 25666.4 Da    PI: 6.3948
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G30380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.4e-12250455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                  +h ++Er+RR+++N+ ++ Lr+l+P++   +  + + a+i+  A++++k+L+
  OB04G30380.1  2 THIAVERNRRRQMNEYLAVLRSLMPES---YVHRGDQASIVGGAIDFVKELE 50
                  8**************************...9******************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.77E-13154No hitNo description
PROSITE profilePS5088814.443149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-17177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-9250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-13263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-10455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MTHIAVERNR RRQMNEYLAV LRSLMPESYV HRGDQASIVG GAIDFVKELE QLLQSLEAQK  60
RTLLMQQPPP PPPPPPPQKQ QQQEVKPDAT TTAATSAVDQ EAAADGPPFA RFFTYPQYVW  120
CHQPPRDGGA ENRAGVADIE VSLVETHASL RVMAPRRPGQ LLKMVAGLQA LRLTVLHLNV  180
TSLGSLALYS ISVKVEEGCG MATVDDIAAA VHHVLCIIDA EAAGARLLLG GEAGGPFG
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G30380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126121e-87CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8552351e-87CR855235.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0142I02-OSIGBa0101B20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691558.11e-174PREDICTED: transcription factor bHLH96-like
SwissprotQ9C7T43e-66BH096_ARATH; Transcription factor bHLH96
TrEMBLJ3M0W31e-173J3M0W3_ORYBR; Uncharacterized protein
STRINGOB04G30380.11e-174(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.19e-58bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]