![]() |
Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
|
Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OB04G29620.1 | ||||||||
Common Name | LOC102711613 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 632aa MW: 66400.2 Da PI: 8.501 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 273 | 9.6e-84 | 265 | 632 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 ++lL e+A+a+++g+le a + La l+ a+++gd qRl+a+++ AL++r+++ +++p+++ ++ +e+ + +l++++sP+++++ +a OB04G29620.1 265 RQLLSEAATAIADGHLETAATHLAALKRAANSRGDVEQRLVAMMVPALSSRIVQ-----TASVPSQHVPDLCGAEQRTGSQLLHDISPCFRLGLQAA 356 689**************************************************9.....4556666666555888888889**************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlvakrledlel 191 N aI++a+ ++++H +Dfd+s + Q + L++ La+R+ + sl++T+v +p+s k++l + ge+L+k+Ae+ g++ +f++ v+ r +++e OB04G29620.1 357 NLAIVDAIGDHRAIHLVDFDVSAP-QHADLIRCLAARRLPGTSLKVTAVTDPSSPftqsLKTTLPAAGEQLQKIAERAGIDYRFKM-VSCRAAEIEA 451 *********************987.99************************9988787778899999******************9.7899****** PP GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288 ++L ++ gEalaVnl+++l +++desvs +++rde+L+ v+ l P+vv +veqe++ n++++ +rf++a+ +y a+++sl++++pres er+ E++ OB04G29620.1 452 SKLGCEAGEALAVNLAFALSHVPDESVSPANPRDEILRRVRALGPQVVALVEQELNSNTAPLTTRFADACAHYGAILESLDVTFPRESAERARAEAA 548 ************************************************************************************************* PP GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 l+ ++ n+v eg er er ++k r+r+++aG +pv+l+ +a+q+ + r+ + + g+ v+ e+g l lgW++r ++++SaWr OB04G29620.1 549 -LAGRAANAVGREGPERLERGGGFGKGRARVGMAGVRPVALGPGIADQVLA--RQGPvVAGFAVKAENGVLRLGWMGRVVTVASAWR 632 .666678****************************************9855..5555569**************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 38.908 | 238 | 613 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.3E-81 | 265 | 632 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 632 aa Download sequence Send to blast |
MEPWRDPHHQ TYPYGGVVRS AVQVTMQQRS DAAAAAAGGV LKRSLGDMER WRKQQQQQRQ 60 LALQQQLFMR TVRQRTAAAS AAVSPLTSAD IAAVLGGPPS QPLVLSGSSM GGTLGSPSST 120 LSSLTTASRA MAMPLTQPQL HLQRQHVTYT PSPQVQVLGT ARALAPPAAA SDMSILQELE 180 KQLLGDDDEV EAAMSGTRSP VTGSEWEEQL NSITTAPSPP LPAAMTPNNN NNNAVGMTRS 240 PSNSSTSTAS SSASCSPPTS ATTSRQLLSE AATAIADGHL ETAATHLAAL KRAANSRGDV 300 EQRLVAMMVP ALSSRIVQTA SVPSQHVPDL CGAEQRTGSQ LLHDISPCFR LGLQAANLAI 360 VDAIGDHRAI HLVDFDVSAP QHADLIRCLA ARRLPGTSLK VTAVTDPSSP FTQSLKTTLP 420 AAGEQLQKIA ERAGIDYRFK MVSCRAAEIE ASKLGCEAGE ALAVNLAFAL SHVPDESVSP 480 ANPRDEILRR VRALGPQVVA LVEQELNSNT APLTTRFADA CAHYGAILES LDVTFPRESA 540 ERARAEAALA GRAANAVGRE GPERLERGGG FGKGRARVGM AGVRPVALGP GIADQVLARQ 600 GPVVAGFAVK AENGVLRLGW MGRVVTVASA WR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 9e-36 | 260 | 632 | 1 | 375 | GRAS family transcription factor containing p |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CT831209 | 0.0 | CT831209.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA055J15, full insert sequence. | |||
GenBank | AK100294 | 0.0 | AK100294.1 Oryza sativa Japonica Group cDNA clone:J023075P18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006652686.1 | 0.0 | PREDICTED: scarecrow-like protein 8 | ||||
TrEMBL | J3M0N7 | 0.0 | J3M0N7_ORYBR; Uncharacterized protein | ||||
STRING | OB04G29620.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4188 | 34 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G52510.1 | 6e-70 | SCARECROW-like 8 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 102711613 |