PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G28350.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 581aa    MW: 63395.9 Da    PI: 4.6946
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G28350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.17.5e-14397444355
                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   ++h + ErrRR+++N+ f  L++l+P+      +K++Ka+iL +++ Y+k+L+
  OB04G28350.1 397 KNHVMSERRRREKLNEMFMILKSLVPSV-----RKVDKASILAETIAYLKELE 444
                   5899***********************7.....6****************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.8E-4919196IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.622394443IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-17397458IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.88E-16397448No hitNo description
Gene3DG3DSA:4.10.280.108.4E-17398460IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-11398444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-16400449IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MASAPVQEQH LQPGTKHFRN QLAAAVRSIG WSYAIFWSIS TSRPVVLAWK DGFYNGEVKT  60
RKISNSEELT AEQRVLQRSE QLRELYCSLL SGECDHRARR PMAALSPEDL GDAEWYYVIC  120
MTYIFRLGQG LPGKSFASNA PVWLYNAQSA DTNTFLRALL AKTIVCIPFM SGVLELGTTD  180
LVSEDPNLVN RIVASFREPQ FPTFLEVPSS SPSPDDMEDA DPVFEGFIDH NAIEQEQTVV  240
VVPPGEHELG DAVVVAANDD LDQVTMEIDE LYSFCEELDL DLDMDVVRFL EDTAGLPVNP  300
GRSFQLVPTT TSSSLEAAAA NDGDAVGDAV ANSRASCFVA WKRASCSDEA MAAVPVTGIE  360
PQKFLKKAVD GGAWMSSNDG DGRDGRVAIM AQESSIKNHV MSERRRREKL NEMFMILKSL  420
VPSVRKVDKA SILAETIAYL KELEKRVKEL ESSSEASARQ RRRREIAGGK VCVVGGGGGD  480
AGREQHRVVI SQQEGAPAAN VDVTVAGKVV VLDVQCRWKE LVMTRVFDAI KSLSLDVLSV  540
QASAPDGLLG LKIQAKFACS GAVAPGMISE ELQKAIGSYY C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5t0f_A8e-20181929188Transcription factor MYC3
5t0q_A8e-20181929188Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1402407ERRRRE
2403408RRRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G28350.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006653663.10.0PREDICTED: anthocyanin regulatory R-S protein-like
RefseqXP_015692285.10.0PREDICTED: anthocyanin regulatory R-S protein-like
SwissprotP130271e-170ARRS_MAIZE; Anthocyanin regulatory R-S protein
TrEMBLJ3M0B00.0J3M0B0_ORYBR; Uncharacterized protein
STRINGOB04G28350.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.32e-58bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Perrot GH,Cone KC
    Nucleotide sequence of the maize R-S gene.
    Nucleic Acids Res., 1989. 17(19): p. 8003
    [PMID:2798145]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]