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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB04G28190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 128aa MW: 13832 Da PI: 7.3434 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 64.3 | 2.4e-20 | 13 | 112 | 260 | 365 |
GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesg 356 l+ ++ l++s++a ++++++++k+Er+l++++++++v + ++ ++ Wr++l +aGF p pls+ a++qa++ll++v+++g++ve+ + OB04G28190.1 13 LLQSCMCLLESIDAA-GTDADAASKIERFLIQPRVEDAVLGRCRA-----DKAIAWRSMLASAGFAPQPLSNLAEAQADCLLKRVQVQGFHVEKLGA 103 68999*******999.8999*******************987776.....88999****************************************** PP GRAS 357 slvlgWkdr 365 lvl+W+++ OB04G28190.1 104 GLVLYWRSK 112 ******975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 10.091 | 1 | 101 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.3E-18 | 13 | 112 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MALVFSQQSL ALLLQSCMCL LESIDAAGTD ADAASKIERF LIQPRVEDAV LGRCRADKAI 60 AWRSMLASAG FAPQPLSNLA EAQADCLLKR VQVQGFHVEK LGAGLVLYWR SKGSFHSNLP 120 TCHSALES |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP014960 | 1e-113 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | AL606647 | 1e-113 | AL606647.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E24, complete sequence. | |||
GenBank | AL606633 | 1e-113 | AL606633.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010H02, complete sequence. | |||
GenBank | AK100757 | 1e-113 | AK100757.1 Oryza sativa Japonica Group cDNA clone:J023118P13, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637143.1 | 2e-53 | PREDICTED: scarecrow-like protein 27 | ||||
TrEMBL | J3M094 | 2e-89 | J3M094_ORYBR; Uncharacterized protein | ||||
STRING | OB04G28190.1 | 6e-89 | (Oryza brachyantha) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00150.1 | 2e-23 | GRAS family protein |