PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G40710.1
Common NameLOC102712343
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 387aa    MW: 41849.5 Da    PI: 10.5767
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G40710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.12.7e-31321379259
                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYeg+Hnh+
  OB03G40710.1 321 ADEFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPSMLIVTYEGDHNHS 379
                   69*************************988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105338.3E-17274318IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.807.6E-34308380IPR003657WRKY domain
PROSITE profilePS5081129.666315381IPR003657WRKY domain
SuperFamilySSF1182901.1E-26318379IPR003657WRKY domain
SMARTSM007742.9E-38320380IPR003657WRKY domain
PfamPF031068.5E-27322378IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MEGMEEANRA AVESCHRVLT LLSSPHSQLV VHKDLAAATG EAVSKFGSVA SRLNNGNGLQ  60
GHARVRKIKK PLSIFDSNLF LESSAVAGST AAKTSNPSPI TSLQLFPRYH QMEGSSSKDP  120
VRIPAQFPKR LLLDNPVVDS DGPSRGPPLQ LIQPVSVAPP AGTPPPALPS AHLHFIQQQQ  180
SYQRFQLLQQ MKMQSEMIKR SGLGEQGGSN GGGKGVNLKF DSSNCTASSS RSFLSSLSME  240
GSIASLDGSR SSRPFQLVSG SQTSSTPELG LMQRRRCTGR EDGSGRCTTG SRCHCSKKRK  300
LRIRRSIKVP AISNKVADIP ADEFSWRKYG QKPIKGSPHP RGYYKCSSVR GCPARKHVER  360
CVDDPSMLIV TYEGDHNHSR VLAAQPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-19308378271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G40710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1218380.0AK121838.1 Oryza sativa Japonica Group cDNA clone:J033100L17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650564.10.0PREDICTED: protein WRKY1-like
RefseqXP_015691263.10.0PREDICTED: protein WRKY1-like
SwissprotQ32SG40.0WRKY1_MAIZE; Protein WRKY1
TrEMBLJ3LSP50.0J3LSP5_ORYBR; Uncharacterized protein
STRINGOB03G40710.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102503242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.13e-53WRKY DNA-binding protein 21