PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G31790.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 198aa    MW: 21295 Da    PI: 8.5133
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G31790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.4e-054870123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  ++C+ Cgk F+++  L  H  +H
  OB03G31790.1 48 FRCSVCGKAFPSHQALGGHKASH 70
                  89*************99998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.4E-124772IPR007087Zinc finger, C2H2
SMARTSM003550.00684870IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.09E-84870No hitNo description
PROSITE profilePS5015710.6994875IPR007087Zinc finger, C2H2
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
SuperFamilySSF576677.09E-8102129No hitNo description
PfamPF139123.2E-11106130IPR007087Zinc finger, C2H2
SMARTSM003550.6107129IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328107129IPR007087Zinc finger, C2H2
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MQMTTSMTHD DYVSLCLMAL AQASVGGQWV QQQQQIQMVS PACDELRFRC SVCGKAFPSH  60
QALGGHKASH RRPTAALALP VHRIDAPSAD DTASSTTTTT TSGGSRHRCS VCHRTFATGQ  120
ALGGHKRCHY WDGLSVVSVT ASASGSGSSS MRNFDLNLKP VPETVAAGVR SWGEEEEVQS  180
PLPFKKRRIS IPSLELNL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1478031e-151AC147803.2 Oryza sativa chromosome 3 BAC OSJNBb0034P05 genomic sequence, complete sequence.
GenBankCP0126111e-151CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBankAC1068871e-151AC106887.3 Oryza sativa chromosome 3 BAC OSJNBa0054H04 genomic sequence, complete sequence.
GenBankAP0149671e-151AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankAP0149591e-151AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankAK1089971e-151AK108997.1 Oryza sativa Japonica Group cDNA clone:002-153-G07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650239.11e-145PREDICTED: zinc finger protein 1-like
TrEMBLJ3LQ531e-146J3LQ53_ORYBR; Uncharacterized protein
STRINGOB03G31790.11e-146(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34123273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04340.13e-28zinc finger of Arabidopsis thaliana 6