PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G31560.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 210aa    MW: 21951.2 Da    PI: 8.4196
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G31560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26084.51.6e-262112197
        DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeer.........edamsslvyeAearardPvyGavgvilkl 83 
                   +C++C+vlr++C+++Cvl+p++     +++q +++ +v+k+FG++ +l++++a+p+ +r           +++sl+yeA  r+ +Pv+Gavg+++++
  OB03G31560.1   2 SCNGCRVLRKGCSDGCVLRPCLqwidaADAQGHATVFVAKFFGRAGLLSFISAVPDAQRpgtyvcmyaCPLFQSLLYEAAGRTINPVHGAVGLLWTG 98 
                   6*********************9998656778***************************999999998889************************** PP

        DUF260  84 qqqleqlkaelall 97 
                   +++l+q++++++l+
  OB03G31560.1  99 NWHLCQAAVDTVLR 112
                   ********998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.5861116IPR004883Lateral organ boundaries, LOB
PfamPF031954.8E-212109IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0060776Biological Processsimple leaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDGCVLR PCLQWIDAAD AQGHATVFVA KFFGRAGLLS FISAVPDAQR  60
PGTYVCMYAC PLFQSLLYEA AGRTINPVHG AVGLLWTGNW HLCQAAVDTV LRGGSIGPLP  120
ELAGAGGDLY GAARRNGGWS TFSTAKRVRK AEVPAAPSCD LGLCLSPGSP PAAGERRAAL  180
RRPGTPSMSS DESVTTTGGE RDPVLLNLFV
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G31560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4059031e-140CU405903.1 Oryza rufipogon (W1943) cDNA clone: ORW1943S102O12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650230.11e-140PREDICTED: LOB domain-containing protein 37
SwissprotQ9FN112e-68LBD37_ARATH; LOB domain-containing protein 37
TrEMBLJ3LQ301e-150J3LQ30_ORYBR; Uncharacterized protein
STRINGOB03G31560.11e-151(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40843675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.11e-67LOB domain-containing protein 37
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]