PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G21490.1
Common NameLOC102718811
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 413aa    MW: 43639.4 Da    PI: 4.8221
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G21490.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.5e-13207253354
                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   ++h+e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L ++++++k+L
  OB03G21490.1 207 KSHSEAERRRRERINAHLARLRSLLPNT-----TKTDKASLLAEVIQHVKEL 253
                   79*************************9.....8****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.022204253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-11207253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-15208274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-15208275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-13210259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.26E-5217256No hitNo description
Gene3DG3DSA:3.30.70.2601.6E-4291340No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MGAHGDDHHH HHHHQEAGVL VDEEEEEEEE EEIEQDCGGP TSGVVEQEIG GDGGGGCHDA  60
AGMVFEATSS VGSVSATMGP PPIMCWPQPA QPVHGAIHGH HNLGGGGGGQ QSPFFPLLPP  120
LPPQPPPPPP FFADFYARRA LQYAYDHSGG ASSSSDPLGL GGLYMGQHGS HVAGMMMTPP  180
FAPSPFGDLG RMTAQEIMDA KALAASKSHS EAERRRRERI NAHLARLRSL LPNTTKTDKA  240
SLLAEVIQHV KELKRQTSEI TEEACPLPTE SDELTVDASS DEDGRLVVRA SLCCDDRTDL  300
LPDLIRALKA LRLRALKAEI TTLGGRVKNV LVVTGDDSAA CAGADGDGEQ QEEDAMQAPM  360
SPQHTVASIQ DALRAVMERT TSATEEPGGS GAGGGGKRQR TTSLSAILEN RSI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212217ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G21490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1066490.0AK106649.1 Oryza sativa Japonica Group cDNA clone:002-113-F07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649780.10.0PREDICTED: transcription factor bHLH30-like
SwissprotQ9S7Y16e-75BH030_ARATH; Transcription factor bHLH30
TrEMBLJ3LM730.0J3LM73_ORYBR; Uncharacterized protein
STRINGOB03G21490.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-56bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]