PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G19600.1
Common NameLOC102711960
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 307aa    MW: 33965.1 Da    PI: 6.0492
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G19600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.6e-12136184355
                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR++iN+++  L++l+P +    +k   Ka++L + ++Y++sLq
  OB03G19600.1 136 NSHSLAERFRREKINERMKLLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 184
                   58**************************....999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.19E-11131188No hitNo description
SuperFamilySSF474591.01E-17131199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.796133183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-18133200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-9136184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-10139189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MYSPPRTAAV NNRGHCFEVG ANQLDLVMDF DEPILFPVHN ASLQEGIQFY NPISVSMFQH  60
SPDSQLSRNM SIDKCLKGSK RKGSGEGSSS LHSQEETGEM PEREISMEHA GEKAGDADAS  120
REDYVHVRAK RGQATNSHSL AERFRREKIN ERMKLLQDLV PGCNKITGKA MMLDEIINYV  180
QSLQRQVEFL SMKLSAISPE LSSGLDLQDI LCARDARSAF LGCSQRLSNA HPSLYRGAQQ  240
GFSRPGLYGV TVNNPADVHM ARTTQLATFP QRGLIWDEEL GNIAPADFAS DAVRTSSLEN  300
SDSMKVE
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G19600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2420030.0AK242003.1 Oryza sativa Japonica Group cDNA, clone: J075103H14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690528.10.0PREDICTED: transcription factor bHLH62-like isoform X2
SwissprotQ9SRT21e-43BH062_ARATH; Transcription factor bHLH62
TrEMBLJ3LLN40.0J3LLN4_ORYBR; Uncharacterized protein
STRINGOB03G19600.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45362933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.18e-46bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]