PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G36990.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 164aa    MW: 17848.6 Da    PI: 10.862
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G36990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.4e-1073114955
                   HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    ++RR+ri +++  L+el+P+      +K++ +++LekA+ Y+k Lq
  OB02G36990.1  73 AKNRRERISERLRILQELVPNG-----TKVDLVTMLEKAISYVKFLQ 114
                   69******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.09164113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-1265122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-1466124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.84E-1066118No hitNo description
SMARTSM003532.0E-1170119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-773114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048766Biological Processroot hair initiation
GO:0005739Cellular Componentmitochondrion
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MTGYADMLLI TFPGRSVHGA RTSLDVRVEK RAQNAAESQA VSPSKKQCGA SRKTSKAKSA  60
PTTPTKDPQS LAAKNRRERI SERLRILQEL VPNGTKVDLV TMLEKAISYV KFLQLQVKVL  120
AKDEFWPAQG GKAPEISQVK EALDAILSSS SSPPPPLAGR QPRN
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G36990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1096621e-164AK109662.1 Oryza sativa Japonica Group cDNA clone:002-143-H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006648975.17e-92PREDICTED: transcription factor bHLH83-like, partial
SwissprotQ9C7073e-54BH083_ARATH; Transcription factor bHLH83
TrEMBLJ3LGD21e-115J3LGD2_ORYBR; Uncharacterized protein
STRINGOB02G36990.11e-116(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.13e-41ROOT HAIR DEFECTIVE6
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  3. Lin CY, et al.
    Pathways involved in vanadate-induced root hair formation in Arabidopsis.
    Physiol Plant, 2015. 153(1): p. 137-48
    [PMID:24833217]
  4. Grierson C,Nielsen E,Ketelaarc T,Schiefelbein J
    Root hairs.
    Arabidopsis Book, 2014. 12: p. e0172
    [PMID:24982600]
  5. Kim CM,Dolan L
    ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon.
    PLoS Genet., 2016. 12(8): p. e1006211
    [PMID:27494519]
  6. Moro CF, et al.
    S-nitrosoglutathione promotes cell wall remodelling, alters the transcriptional profile and induces root hair formation in the hairless root hair defective 6 (rhd6) mutant of Arabidopsis thaliana.
    New Phytol., 2017. 213(4): p. 1771-1786
    [PMID:27880005]
  7. Bahmani R,Kim DG,Kim JA,Hwang S
    The Density and Length of Root Hairs Are Enhanced in Response to Cadmium and Arsenic by Modulating Gene Expressions Involved in Fate Determination and Morphogenesis of Root Hairs in Arabidopsis.
    Front Plant Sci, 2016. 7: p. 1763
    [PMID:27933081]
  8. Liao X,Lovett B,Fang W,St Leger RJ
    Metarhizium robertsii produces indole-3-acetic acid, which promotes root growth in Arabidopsis and enhances virulence to insects.
    Microbiology (Reading, Engl.), 2017. 163(7): p. 980-991
    [PMID:28708056]
  9. Feng Y, et al.
    Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839
    [PMID:29233944]