PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G18010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 373aa    MW: 39409.8 Da    PI: 9.292
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G18010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.61.5e-17202235134
          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                   Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  OB02G18010.1 202 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 235
                   *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577165.7E-13193236No hitNo description
SMARTSM004011.8E-18196247IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.268200232IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.5E-14200235IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.67E-13201231No hitNo description
PfamPF003202.8E-15202235IPR000679Zinc finger, GATA-type
PROSITE patternPS003440202227IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MTIAEPATSS QISSASLPSL FLLSGMSTIY MSQLPATLPL MEGDQDQGLF PAFHRAKDPP  60
ILFPFMIDSA VEHQGQSYGD QSLRRQQVLG ESNQQFNDHV MMGGSDVFLT PSPFRPTIQS  120
IGSDMIQRSS YDLYDVENKH AGGGSSSKWM STPPVKMRII RKGAATDPEG GAAVRKPRRR  180
AQAHQDESQL QQQQAMGVVR VCSDCNTTKT PLWRSGPCGP KSLCNACGIR QRKARRAMAA  240
AANGGAAAPP PAKSAVASGA AVNKPAKKEK RTDVDRSLPF KKRCKMVVDH AVVTATAAKA  300
ATASIDAAAP KNDPDHVVGG GEENDAAAVA ESPATKAAGA TGAPPAFFHG LPRDEITDAA  360
MLLMTLSCGL VRS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6, ECO:0000269|PubMed:23548780}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G18010.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269|PubMed:23548780}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0996070.0AK099607.1 Oryza sativa Japonica Group cDNA clone:J013048G01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006648462.10.0PREDICTED: putative GATA transcription factor 22
SwissprotQ6YW481e-172CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBLJ3LAY40.0J3LAY4_ORYBR; Uncharacterized protein
STRINGOB02G18010.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.11e-19cytokinin-responsive gata factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Behringer C,Schwechheimer C
    B-GATA transcription factors - insights into their structure, regulation, and role in plant development.
    Front Plant Sci, 2015. 6: p. 90
    [PMID:25755661]