PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G51580.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 762aa    MW: 85673.7 Da    PI: 7.0197
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G51580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3727.4e-2383184199
                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                   f+k+lt sd++++g +++ +++a+e+       +++++  ++l+ +d++g  W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + +++
  OB01G51580.1  83 FCKTLTASDTSTHGGFSVLRRHADEClppldmtQSPPT--QELVAKDLHGMDWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGENG 175
                   99*****************************7555544..58************************************************..44999 PP

                   ..EEEEE-S CS
            B3  91 elvvkvfrk 99 
                   el+v+v+r+
  OB01G51580.1 176 ELRVGVRRA 184
                   9*****996 PP

2Auxin_resp111.39.6e-37209290183
    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                   a+ha++tks+F+v+Y+Pr+s+seF++++++++++ k+++svGmRf+m+fe+e+++e+r++Gt++g ++ld+  Wp+S WrsLk
  OB01G51580.1 209 AWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESAKNNYSVGMRFRMRFEGEEAPEQRFTGTIIGSENLDT-MWPDSSWRSLK 290
                   89******************************************************************999.9********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.79E-4075212IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.1E-4076198IPR015300DNA-binding pseudobarrel domain
CDDcd100173.44E-2081183No hitNo description
PfamPF023621.1E-2083184IPR003340B3 DNA binding domain
PROSITE profilePS5086311.78783185IPR003340B3 DNA binding domain
SMARTSM010194.0E-2283185IPR003340B3 DNA binding domain
PfamPF065071.5E-33209290IPR010525Auxin response factor
PfamPF023091.5E-14626731IPR033389AUX/IAA domain
SuperFamilySSF542772.55E-13640723No hitNo description
PROSITE profilePS5174526.238646739IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    Send to blast
MGRGKWGEKK HETGCSFGLP VPWTSTSLAT KYLCTSTVLA EQDTDEVYAQ IMLMPEPEQN  60
EMAVEKTTPT SGPVQARPPV RSFCKTLTAS DTSTHGGFSV LRRHADECLP PLDMTQSPPT  120
QELVAKDLHG MDWRFRHIFR GQPRRHLLQS GWSVFVSSKR LVAGDAFIFL RGENGELRVG  180
VRRAMRQLSN VPSSVISSQS MHLGVLATAW HAINTKSMFT VYYKPRTSPS EFIIPYDQYM  240
ESAKNNYSVG MRFRMRFEGE EAPEQRFTGT IIGSENLDTM WPDSSWRSLK VRWDEPSTIP  300
RPDRVSPWKI EPASSPPVNP LPLSRVKRSR PNAPPASPES PILTKEAATK VDIDSAQAQR  360
SQNNMVLQGQ EQMTLRNNLT DSNDPDAAAP KPMMWSPSPN GAKPHPLSFQ QRPPMDSWMQ  420
LGRRENDFKD PRSGSQSFGD SSGFFVQNFD EAPNRLSSFK NQFQDQGSAR HFSDPYFFVS  480
PQPSLTVESS TQMHTDSKEL HFWNGQSTVY NSRDQPQNFR FEQNSSSWLN QSFSRPEQPR  540
VIRPHASIAP VELEKTGEGS GFKIFGFKVD TTNAPNNHLS SPMAATHEPM IQTPSSLNQL  600
QSAQTDCIPE VSVSTAGTAT ENEKSAQQAQ QSSKDVQSKS QGASTRSCTK VHKQGVALGR  660
SVDLSKFSNY DELKAELDKM FEFEGELVSS NKNWQIVYTD NEGDMMLVGD DPWEEFCSIV  720
RKIYIYTKEE VQKMNSKSNT PRKEDSTENE KSHLPVLHKS DN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1351831559357Auxin response factor 1
4ldw_A1e-1351831559357Auxin response factor 1
4ldw_B1e-1351831559357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G51580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0712930.0AB071293.1 Oryza sativa OsARF2 mRNA for auxin response factor 2, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015699221.10.0PREDICTED: auxin response factor 4
SwissprotQ5JK200.0ARFD_ORYSJ; Auxin response factor 4
TrEMBLJ3L7F20.0J3L7F2_ORYBR; Auxin response factor
STRINGOB01G51580.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Song X, et al.
    Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development.
    Plant J., 2012. 71(3): p. 378-89
    [PMID:22443269]
  3. Kishimoto N, et al.
    Identification of the duplicated segments in rice chromosomes 1 and 5 by linkage analysis of cDNA markers of known functions.
    Theor. Appl. Genet., 1994. 88(6-7): p. 722-6
    [PMID:24186168]