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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB01G49600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 257aa MW: 27535.6 Da PI: 5.6942 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 88.5 | 1.1e-27 | 168 | 256 | 285 | 374 |
GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 E++ +g ei+nvv cega+r+erhe++ +Wr+r+++aGF++vp++ +a++a+ l + gy+v ee+g+lvlgWk++p++++S+W+ OB01G49600.1 168 AEAFHFGAEIRNVVGCEGAARVERHERADQWRRRMSRAGFQSVPIK--MASKAREWLDDNAaAGGYTVAEEKGCLVLGWKGKPVIAASCWK 256 68999***************************************96..67889999999887999*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 3.8E-25 | 168 | 256 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MSTEPCRSAL NSISYCSPQQ SHHLNPTQQD ASVICSANQE LDYYYRFYDV DEAAFDGNEV 60 ELVSRVSKLG RVDYLSSPYQ PSWPTAAAHA AGSSSETSRV RKKRFWDVLQ SCKQKVEAQE 120 AMEAPAAAFL DGEGDGVGAG DGGDGGGGGG GGGGADGMRL VQLLVACAEA FHFGAEIRNV 180 VGCEGAARVE RHERADQWRR RMSRAGFQSV PIKMASKARE WLDDNAAAGG YTVAEEKGCL 240 VLGWKGKPVI AASCWKC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012609 | 1e-108 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. | |||
GenBank | AP014957 | 1e-108 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | AP006757 | 1e-108 | AP006757.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0551C06. | |||
GenBank | AP003791 | 1e-108 | AP003791.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1065G12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015690691.1 | 1e-156 | PREDICTED: uncharacterized protein LOC107303918 | ||||
TrEMBL | J3L6V4 | 0.0 | J3L6V4_ORYBR; Uncharacterized protein | ||||
STRING | OB01G49600.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5640 | 33 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 7e-20 | RGA-like 1 |