PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G49420.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 147aa    MW: 16448.6 Da    PI: 8.5005
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G49420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.4e-1381126655
                   HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +++Er RR ri +++ +L++l+P+     +k  + +++L  Av+YIk+Lq
  OB01G49420.1  81 SIAERERRTRISKRLKKLQDLVPNM----DKQTNTSDMLDIAVNYIKELQ 126
                   689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.25375125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-1678135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.72E-1279130No hitNo description
Gene3DG3DSA:4.10.280.108.4E-1680136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-1381131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-1081126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MSSWDDTNSI MFSPPSSSKK ARVGGDHGDD MVSSFSNIDS QFGLSKSSLE MSSMDDFMQL  60
QPDSVACRAR AKRGCATHPR SIAERERRTR ISKRLKKLQD LVPNMDKQTN TSDMLDIAVN  120
YIKELQGQVE KLKHDQANCT CLGKQNC
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G49420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0682541e-141AK068254.1 Oryza sativa Japonica Group cDNA clone:J013149F02, full insert sequence.
GenBankAK1057131e-141AK105713.1 Oryza sativa Japonica Group cDNA clone:001-201-E12, full insert sequence.
GenBankHQ8588591e-141HQ858859.1 Oryza sativa Japonica Group isolate UT1668 bHLH transcription factor mRNA, partial cds.
GenBankHQ8588681e-141HQ858868.1 Oryza sativa Japonica Group isolate UT1677 HLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690675.11e-105PREDICTED: transcription factor bHLH128-like, partial
SwissprotQ8H1021e-45BH128_ARATH; Transcription factor bHLH128
TrEMBLJ3L6T61e-105J3L6T6_ORYBR; Uncharacterized protein
STRINGOB01G49420.11e-106(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70713752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.16e-48bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]