PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G37710.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 122aa    MW: 14006.5 Da    PI: 9.3677
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G37710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.92.7e-303694159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY  1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                  ldDgy+WrKYG+K+vk+s++pr+YYrC+++gC+vkk+ver+++dp++v+++Yeg+H h 
  OB01G37710.1 36 LDDGYKWRKYGKKTVKNSPNPRNYYRCSTEGCTVKKRVERDRNDPRYVVTMYEGRHSHV 94
                  59*******************************************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-312294IPR003657WRKY domain
SuperFamilySSF1182906.54E-272895IPR003657WRKY domain
PROSITE profilePS5081131.1693196IPR003657WRKY domain
SMARTSM007741.2E-313695IPR003657WRKY domain
PfamPF031064.0E-243793IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
SEGEHFRTAV AALADEGRAR TTDRIAFRTR SDDEVLDDGY KWRKYGKKTV KNSPNPRNYY  60
RCSTEGCTVK KRVERDRNDP RYVVTMYEGR HSHVCPGTVY YAAQDAASGR FFVAGMHHPD  120
LN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-252696777Probable WRKY transcription factor 4
2lex_A5e-252696777Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G37710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1085551e-123AK108555.1 Oryza sativa Japonica Group cDNA clone:002-144-E10, full insert sequence.
GenBankAY8706091e-123AY870609.1 Oryza sativa (japonica cultivar-group) WRKY26 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689727.13e-82PREDICTED: probable WRKY transcription factor 50, partial
SwissprotQ8VWQ51e-35WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBLJ3L3G54e-86J3L3G5_ORYBR; Uncharacterized protein
STRINGOB01G37710.17e-87(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.16e-38WRKY DNA-binding protein 50
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]