PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G37310.1
Common NameLOC102704010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 386aa    MW: 39929.4 Da    PI: 6.6943
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G37310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.42e-06287327954
                   HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    r RR+r+ +++  L++l+P        K++ a++L +A  Y+k L
  OB01G37310.1 287 ARLRRERVSDRLRVLQKLVPGG-----SKMDTASMLDEAASYLKFL 327
                   599*****************95.....5****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.24E-10269332No hitNo description
PROSITE profilePS5088814.411278327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-13284337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-12284333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-10287336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
METFGWAGGG QLHDDVYFPR SVGCGRFELD DAFLGACFGS QLQYCDDGGV GAGGGHVGDD  60
GGCLQGASGF GAMGDPLGLL CSGDMFASVA EGAGTHDEGL LDAALAFSRK LGAPCDGISD  120
GGAVSNGAML SSYSGTTGGN ISSGESNNYS GGCYDAEVVS PTSTMSPTTT SLTQPPLHHP  180
KRKLYDDHPA IAAAAAAPPF APRPNLGAAV KRKASTSATS ITFVQPCHHH DPTAAGYEPD  240
VEAMAQVKEM IYRAAAMRPV HLGTEAAADK PRRKNVRISS DPQTVAARLR RERVSDRLRV  300
LQKLVPGGSK MDTASMLDEA ASYLKFLKSQ VQKLETLGTS SSTAKLQHHY YGGGSSSSSH  360
GMLAFAANNN TISGYANSNG NATKLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1268274DKPRRKN
2269274KPRRKN
3287292RLRRER
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the negative regulation of flowering. May be involved in the repression of the flowering factor GI and HD1 by interacting with PIL13 and PIL15 and competing with PRR1. Possesses transactivation activity in yeast. {ECO:0000269|PubMed:21549224}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G37310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1002081e-176AK100208.1 Oryza sativa Japonica Group cDNA clone:J023042H10, full insert sequence.
GenBankAK1061191e-176AK106119.1 Oryza sativa Japonica Group cDNA clone:001-207-E08, full insert sequence.
GenBankAP0032731e-176AP003273.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0510F09.
GenBankAP0033811e-176AP003381.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0692C11.
GenBankAP0149571e-176AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644587.10.0PREDICTED: uncharacterized protein LOC102704010
SwissprotA0A0P0WQ902e-53LF_ORYSJ; Transcription factor LATE FLOWERING
TrEMBLJ3L3C50.0J3L3C5_ORYBR; Uncharacterized protein
STRINGOB01G37310.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.11e-35bHLH family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]