PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G30110.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 306aa    MW: 33091.5 Da    PI: 6.6399
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G30110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.5e-13105151455
                   HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                   +h   ErrRR+++N+ f  L++l+P+ +      K++Ka+iL +++ Y+k+L+
  OB01G30110.1 105 NHVVSERRRREKLNEMFLILKSLIPSiN------KVDKASILAETIAYLKELE 151
                   79999*********************77......****************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.126101150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.46E-14104155No hitNo description
SuperFamilySSF474595.23E-18104164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-18105164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-10105151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-15107156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEIDEMIYSL IGDCQEDGLD DADIFVVPSL VEDDNNGGGG GGWLLRRVAA SPASCFVAWK  60
RTGSDEEEAA VVAGESPGQK LLKKAVGGGA WMKNNGRGPG NSMKNHVVSE RRRREKLNEM  120
FLILKSLIPS INKVDKASIL AETIAYLKEL ERRVQELESS RQGVPRDEPD IAGNKKQASA  180
GAKAKRKKPP SSEVAGAGGG AAREHHHHSW VVHSEEEEEG AATASDVHVM IVTEKEQLQV  240
EVRCRWKELV MTRVFDAIKS LRLDVLSVQA SAPDGLLRLN IRAKYASSAA VPPGVISEAL  300
RTAVGN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109114ERRRRE
2110115RRRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G30110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689085.10.0PREDICTED: anthocyanin regulatory Lc protein-like
SwissprotP130279e-62ARRS_MAIZE; Anthocyanin regulatory R-S protein
TrEMBLJ3L1A50.0J3L1A5_ORYBR; Uncharacterized protein
STRINGOB01G30110.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.19e-35bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Perrot GH,Cone KC
    Nucleotide sequence of the maize R-S gene.
    Nucleic Acids Res., 1989. 17(19): p. 8003
    [PMID:2798145]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]