PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G16060.1
Common NameLOC102702604
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 484aa    MW: 51235.3 Da    PI: 8.7166
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G16060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.42.8e-067496123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  y+C++Cgk F r  nL+ H r H
  OB01G16060.1 74 YVCEICGKGFQRDQNLQLHRRGH 96
                  9********************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.16E-87396No hitNo description
PROSITE profilePS5015711.8017496IPR007087Zinc finger, C2H2
SMARTSM003550.00697496IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.3E-67496IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
SMARTSM0035544116146IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.4E-4139171IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.16E-8146171No hitNo description
SMARTSM00355150151171IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MMLKDLAEIQ QQQQQLAAEE NMSNLTSASG DQASVSSHPA PPPAKKKRSL PGNPDPEAEV  60
IALSPKTLMA TNRYVCEICG KGFQRDQNLQ LHRRGHNLPW KLKQRNPKEA VRKKVYVCPE  120
AGCVHHDPAR ALGDLTGIKK HFSRKHGEKK WKCDKCSKRY AVHSDWKAHS KVCGTREYRC  180
DCGTLFSRRD SFITHRAFCD ALAEESARAV TAAAAVAGQQ HAGAGLLFPQ GGGGLQLPAV  240
LDHPAMAMGG HGLMQELCLK REQQQQFAPS WLTAQQQQLE TMGSAVSPAA MYGSARLDQE  300
FIGSSTPESG AAQHQGGLSF AFSSTSSAPP PVASSAHMSA TALLQKAAQM GATLSRPSSQ  360
GQMAAASTHN STSATTNAAP PPTSNVTSTC VGAGSYGLAF EASHFIGADD RTRSDRATSN  420
GGGGGATAGA GNDGLTRDFL GLRAFSHGDI MSMAGFDPCS MSTTSASSAA YDQGHHHSNK  480
PWHS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100113KLKQRNPKEAVRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1056630.0AK105663.1 Oryza sativa Japonica Group cDNA clone:001-200-H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006643871.10.0PREDICTED: protein indeterminate-domain 11-like
SwissprotQ8H1F51e-124IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLJ3KXA00.0J3KXA0_ORYBR; Uncharacterized protein
STRINGOB01G16060.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-106indeterminate(ID)-domain 7