PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G11830.1
Common NameLOC102721775
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 290aa    MW: 30907.8 Da    PI: 7.0778
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G11830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.24e-314106198
        DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                   +C++C+vlr++C+++C+++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +PvyG+vg+++++++ql+q+++
  OB01G11830.1   4 SCNGCRVLRKGCSDNCAIRPCLqwirsPDAQANATVFLAKFYGRAGLINLITAGPEHVRPAIFRSLLYEACGRMLNPVYGSVGLLWSGNWQLCQSAV 100
                   6***********************************************************************************************9 PP

        DUF260  93 elallk 98 
                   e +l++
  OB01G11830.1 101 ESVLRG 106
                   988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381551.6E-1011287IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089116.5773109IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-244102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDNCA IRPCLQWIRS PDAQANATVF LAKFYGRAGL INLITAGPEH  60
VRPAIFRSLL YEACGRMLNP VYGSVGLLWS GNWQLCQSAV ESVLRGMPIA QPPPSATAVP  120
PLPTCDIRHV GRRGDHGASP LADLHRLDNS SRPKFKRPGG AGHRSDVSSF ELVFSKPSAA  180
MAIDVVRQAQ PLNWAPGALS HESASHDAVP PESEGHSNDT ADTVDGSHVS QSEPEPRATE  240
VHDAGLDLTL GLQPAPVQKA EPADSDGSNH DRKEKPVELG LAISTSVAAQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G11830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0025381e-131AP002538.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0408F06.
GenBankAP0149571e-131AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006643695.10.0PREDICTED: LOB domain-containing protein 40
TrEMBLJ3KW270.0J3KW27_ORYBR; Uncharacterized protein
STRINGOB01G11830.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.11e-68LOB domain-containing protein 40