PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART07G19610.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 174aa    MW: 19488.1 Da    PI: 8.3089
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART07G19610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.8e-184999155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     s++ GVr+++ +grWvAeI+d +   ++ r +lg+f ta+ Aa+a+++a++ l+g
  OBART07G19610.1 49 SKFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETADAAARAYDEAARLLRG 99
                     79********.7*********32...35***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.64E-1749105IPR016177DNA-binding domain
CDDcd000182.04E-1549104No hitNo description
PfamPF008474.2E-124999IPR001471AP2/ERF domain
PROSITE profilePS5103218.42650107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-2550105IPR001471AP2/ERF domain
SMARTSM003806.4E-2950113IPR001471AP2/ERF domain
PRINTSPR003673.7E-75162IPR001471AP2/ERF domain
PRINTSPR003673.7E-77389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MELNFQVQPP VFQLQDYCYY YSQEVAAAAS PAAKPTKPRG RKKGSTSHSK FVGVRQRPSG  60
RWVAEIKDTT QKIRMWLGTF ETADAAARAY DEAARLLRGA EARTELRATH LAGCPLAESS  120
AGTPPVEMAE FERIKVERRI SASLYAMNGL QEYFDKVFDA SACDPFWDFS PLCH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankAP0038450.0AP003845.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1699_E05.
GenBankAP0037580.0AP003758.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1562_B11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646240.13e-54PREDICTED: ethylene-responsive transcription factor RAP2-11-like
TrEMBLA0A0D3GSP71e-128A0A0D3GSP7_9ORYZ; Uncharacterized protein
STRINGBGIOSGA024035-PA1e-53(Oryza sativa Indica Group)
STRINGLOC_Os07g38750.11e-53(Oryza sativa Japonica Group)
STRINGORGLA07G0253000.11e-53(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39003273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-18related to AP2 11