PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G27860.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 158aa    MW: 18100.9 Da    PI: 5.3714
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G27860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.6e-12749754
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                     ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  OBART06G27860.1  7 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 49
                     79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.485149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.19E-16568IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-12655IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.40E-5754No hitNo description
Gene3DG3DSA:4.10.280.105.3E-16766IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-9749IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.91E-4101129No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MPSKNLMAER RRRKRLNDRL SMLRSVVPKI SKMDRTSILG DTIDYMKELL ERIRQLQEEI  60
EEQQQQETPG VLSVFRELNP NEMLARNTPK FDVERKEGGD TRVEIYCAAK PGLLLSTVST  120
LETLGLDIQQ CVVSCFNDFG MHASCSEVLP PPLSLLDY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1815ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0635230.0AK063523.1 Oryza sativa Japonica Group cDNA clone:001-116-H12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643717.11e-103transcription factor bHLH93
SwissprotQ9LSL11e-57BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A0D3GKZ11e-110A0A0D3GKZ1_9ORYZ; Uncharacterized protein
TrEMBLA0A0D3GKZ71e-111A0A0D3GKZ7_9ORYZ; Uncharacterized protein
STRINGOBART06G27800.11e-111(Oryza barthii)
STRINGOBART06G27860.11e-112(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.15e-39beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]