PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G23910.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 326aa    MW: 36241.4 Da    PI: 8.1582
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G23910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like32.81.5e-101233355
          G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55
                     +++m+vkgLtl+h+kSHLQk+Rl
  OBART06G23910.1  1 MRVMGVKGLTLYHLKSHLQKFRL 23
                     789*******************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-9124IPR009057Homeodomain-like
PfamPF143792.3E-2459105IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MRVMGVKGLT LYHLKSHLQK FRLGKQHKDF NDHSVKDAMD MQRNAASSSG IMGRSMNDVH  60
VNEALRMKME VQRRFHEQLE VQKHLQMRVE AQGKYMQTIL EKAYQAISSS GDCATWHAGY  120
KSLGSQAVLD IGSSMSFPSL QDDLQLYGGS HLDHLHQQHE QMEIRPSIDT FLAFNYSSST  180
GKSPMVWPGA DDGGGEPAKI SGDHQLQMAA PATTTMMMEA ITMSGGDSMG SKGFEGQMSS  240
KLDMRSPPPQ QTVLPVGSER MSSPIVGAKA RNISYGTACM HTDCLRAIQL IQSKEEERSE  300
LAFLVREIRN LMAGNRDIVI LKIHRN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1195880.0AK119588.1 Oryza sativa Japonica Group cDNA clone:002-117-C12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881808.10.0myb family transcription factor APL isoform X2
TrEMBLA0A0D3GJM80.0A0A0D3GJM8_9ORYZ; Uncharacterized protein
STRINGOBART06G23910.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25043890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79430.17e-47G2-like family protein