PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G10380.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 194aa    MW: 20587.3 Da    PI: 5.7536
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G10380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3376e-1278158489
                      E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSSE CS
               B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.grse 89 
                      ++ +s+v    ++v+p++fa      + ++ t    + +grsW +++  ++++    l++GW++F+ +n+L+ gD +vF+l  g  +
  OBART04G10380.1  78 IMCKSHVQPPFQVVVPRSFAPLL---PSRT-TPATLSWRGRSWGMRF--TGGRLIQRLEAGWRGFAVDNDLRLGDGCVFELLvGGGG 158
                      677899999999********433...3333.44446789********..88888899***********************5423222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-1572171IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.7E-1572172IPR015300DNA-binding pseudobarrel domain
CDDcd100171.06E-1373171No hitNo description
PROSITE profilePS5086312.49275173IPR003340B3 DNA binding domain
PfamPF023622.3E-976158IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MASDPTELRC SSPESSGDAG AEDPAAVDAA EESGGEGGSG HIAAGTEAAP PRPPEPEPEK  60
VARHGVLPLL GKPYFTCIMC KSHVQPPFQV VVPRSFAPLL PSRTTPATLS WRGRSWGMRF  120
TGGRLIQRLE AGWRGFAVDN DLRLGDGCVF ELLVGGGGEQ ERVEFRVQVL RAEIPARIRG  180
RAGGYTSATP IVID
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1199990.0AK119999.1 Oryza sativa Japonica Group cDNA clone:002-184-H05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635251.11e-138B3 domain-containing protein Os04g0386900
SwissprotQ7XLP41e-139Y4869_ORYSJ; B3 domain-containing protein Os04g0386900
TrEMBLI1P6301e-137I1P630_ORYGL; Uncharacterized protein
STRINGORGLA02G0343600.11e-137(Oryza glaberrima)
STRINGORGLA04G0074500.11e-137(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89543545
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]