PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G02840.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 365aa    MW: 39600.7 Da    PI: 4.6341
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G02840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376.2e-12144186754
                      HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  OBART03G02840.1 144 MAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYVKEL 186
                      79*********************66......****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.129137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-16142215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-13143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.17E-5144191No hitNo description
PfamPF000101.7E-9144186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-16144207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MELDEESFLD ELMSLRRDGS APWQAPPYPG GGGGGGMMMS DLLFYGGDGG SAEARGGMDA  60
SPFQELASMA APPPQHPHEE FNFDCLSEVC NPYRSCGAQL VPSEAASQTQ TQLAPLRDAM  120
VAEEETGGVH PRSKLHGTPS KNLMAERRRR KRLNDRLSML RSIVPKISKM DRTSILGDTI  180
DYVKELTERI KTLEEEIGAT PEELDLLNTM KDSSSGNNNE MLVRNSTKFD VENRGSGNTR  240
IEICCPANPG VLLSTVSALE VLGLEIEQCV VSCFSDFGMQ ASCLQEDGKR QVVSTDEIKQ  300
TLFRSAGYGG SSGSTSFLNT PESKLKICSS IVSFAFVNRY GSRPCDLSNI GFELNAKVPI  360
VCTLA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145152ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0600290.0AK060029.1 Oryza sativa Japonica Group cDNA clone:006-303-F08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629094.10.0transcription factor bHLH93
TrEMBLA0A0D3FDI20.0A0A0D3FDI2_9ORYZ; Uncharacterized protein
STRINGOBART03G02840.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.13e-58beta HLH protein 93