PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G32430.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 168aa    MW: 16029.4 Da    PI: 10.5496
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G32430.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP42.62.2e-136494131
              TCP  1 aagkkdrhskihTkvggRdRRvRlsaecaar 31
                     aa+k+++++++hTkv+gR+RR+R++a+caar
  OBART02G32430.1 64 AAPKRSSTKDRHTKVEGRGRRIRMPALCAAR 94
                     689**************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.4E-97094IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MDVAGDAGGG RRPNFPLQLL EKKEEQPCSS SAAGGGTGPS SAGGNGNNGS GPGGAGGEMQ  60
VRKAAPKRSS TKDRHTKVEG RGRRIRMPAL CAARQLGLGP VGGGGGGGGG GEGHMGILAA  120
LNAYRTQAAT DAAGQQGGGG GGGGSSQQQH GGGGGGGERH QSISTSDS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057331e-151AP005733.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0024K03.
GenBankAP0058481e-151AP005848.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0078N11.
GenBankAP0149581e-151AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624016.15e-45transcription factor TCP14
TrEMBLA0A0D3FAG51e-109A0A0D3FAG5_9ORYZ; Uncharacterized protein
STRINGOBART02G32430.11e-110(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37443479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.11e-15TCP family protein