PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G25260.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 210aa    MW: 21779.6 Da    PI: 10.8106
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G25260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP113.43.1e-35541458107
              TCP   8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa.kskk 99 
                       +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tgt++++a ++ +++ s ss++          ++  +k+
  OBART02G25260.1  54 GKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGTGTTPAAFVsSSAPSTSSHQ----------HTlLGKR 137
                      5899999***************************************************9999966622222222222..........2212222 PP

              TCP 100 sqksaasa 107
                      +++++a+ 
  OBART02G25260.1 138 QRQESAAS 145
                      22222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.2E-3153138IPR005333Transcription factor, TCP
PROSITE profilePS5136927.00954108IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MSSRDAAATF HVYQPVQIPT ATVAPAAAVS TAPAEAVAQL VPAPSKKAAG AAGGKDRHSK  60
VNGRGRRVRM PIVCAARVFQ LTRELGLKSD GQTIEWLLRQ AEPSILAATG TGTTPAAFVS  120
SSAPSTSSHQ HTLLGKRQRQ ESAASDAVSV AGAASAFWAA LPAPGRPDAW GFSPLDAQPT  180
YVPMAQAHHH HLNLLAALSG AARRAEEESR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00643PBMTransfer from BGIOSGA008683Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624938.11e-100transcription factor TCP7
SwissprotQ9FMX23e-39TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A0D3F8021e-147A0A0D3F802_9ORYZ; Uncharacterized protein
STRINGOBART02G25260.11e-148(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP194133100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.17e-28TCP family protein