PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G23210.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 251aa    MW: 26884.2 Da    PI: 10.4624
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G23210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.7e-13187232655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L+el+P+     +k  s a++L +Ave+Ik Lq
  OBART02G23210.1 187 SIAERERRTRISEKLRKLQELVPNM----DKQTSTADMLDLAVEHIKGLQ 232
                      689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.723181231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-16184246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.43E-12185236No hitNo description
Gene3DG3DSA:4.10.280.104.9E-15186244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13187237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-10187232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MMRRGRRAWA SAAGRERGLA GAAQQLAGRI LLQPHGQQRA SSNGFPGSKG GGGSGAEAHH  60
HHHHPSMAGS GSGSSSGGRK MKSQLSFTAG PPHLSHIAED GAFPDRAGAE ASVPRTFSAG  120
GGFSIVGPWE ESRDIISTLG GYESQFGGMA STSALEMAGM DRYLQLQHDQ VPFKVRAKRG  180
CATHPRSIAE RERRTRISEK LRKLQELVPN MDKQTSTADM LDLAVEHIKG LQSQLQALKH  240
EQEKCTCCSR P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1108330.0AK110833.1 Oryza sativa Japonica Group cDNA clone:002-172-A09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625725.11e-123transcription factor bHLH128 isoform X1
SwissprotQ8H1023e-50BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A0D3F7B30.0A0A0D3F7B3_9ORYZ; Uncharacterized protein
STRINGOBART02G23210.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115313141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.13e-49bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]