PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G13420.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 380aa    MW: 43514.5 Da    PI: 9.8785
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G13420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like26.31.7e-08135197155
          G2-like   1 kprlrWtpeLHerFveaveqLG.GsekAtPktilelmkv.......kgLtlehvkSHLQkYRl 55 
                      k+r  WtpeL + F+e  e+L     + +P +ilelmk+       + Lt++ v S LQkY+ 
  OBART01G13420.1 135 KKRFIWTPELSKIFIEIYEELLlTRINPVPTKILELMKLrigpmndPELTRNTVSSYLQKYKA 197
                      6899**************9874155689********976333333368*************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.3E-13132200IPR009057Homeodomain-like
SuperFamilySSF466894.48E-6133198IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MVVVGDEAVQ RAVVLRLGVN FRATVCSEIN AAVEMLRERT KEFDFAVISE ESIRSLRPEI  60
MKFLGEETGL RLLGICLFFD LLVVPVVRRS DTVCIEVSHA SSARLPAASS VRRATNGRKH  120
RRRAGEKSSQ HRQRKKRFIW TPELSKIFIE IYEELLLTRI NPVPTKILEL MKLRIGPMND  180
PELTRNTVSS YLQKYKAYLL KQEQKDQQLP IDDNTNTSSI KSQQGSASLQ QQIMNYGEND  240
SMDNQSIILS QTRYNEYSNK QPKLLTANYH GPRNMHHHHK NTNNMQPSNV LRPPNLINAK  300
GFTMSFNKEE INEAIYQSQL TTRRVSATHA IAKAQASWRV TMTKDMHPIS QLHQQDDETT  360
PDDSSNNTNS IYEKFWGSLA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120136RRRAGEKSSQHRQRKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0029530.0AP002953.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0426D06.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644297.15e-81uncharacterized protein LOC107277009
TrEMBLA0A0D3EN570.0A0A0D3EN57_9ORYZ; Uncharacterized protein
STRINGOBART01G13420.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1378244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58080.18e-10response regulator 18