PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G08800.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 356aa    MW: 36894.5 Da    PI: 4.7194
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G08800.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like33.77.8e-11209235128
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAt 28 
                      k +++WtpeLH+rFv+aveqL G++kA 
  OBART01G08800.3 209 KVKVDWTPELHRRFVQAVEQL-GIDKAA 235
                      5689*****************.898886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-9207235IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-8209235IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MLEVSTLRSP KADQRAGVGG HHVVGFVPAP SPADVADEVD AFIVDDSCLL EYIDFSCCDV  60
PFFHADDGDI LPDLEVDPTE LLAEFASSPD DEPPPTSAAS PGEPAAAGGA KEDVKEDGAA  120
AAADYDGSPP PPRGKKKDEE ERSSSLLEEK DAKNGGGGGD EVLSAVTTED SSAGAAKSSS  180
PSAEGHSKRK PSSSSSSAAA GKNSHGKRKV KVDWTPELHR RFVQAVEQLG IDKAAARKWG  240
PQAVTPGTPC MPPPLPPAAM LQRFPVPPVP GMVPHPMYRP IPPPLPPQGN KLAALQLQLD  300
AHPSKESIDA AIGDVLVKPW LPLPLGLKPP SLDSVMSELH KQGIPKVPPA ASGAAG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8340420.0CT834042.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA220E01, full insert sequence.
GenBankCT8340430.0CT834043.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI203A14, full insert sequence.
GenBankCT8340440.0CT834044.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI210C09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615905.11e-116probable transcription factor GLK2 isoform X1
SwissprotQ5NAN51e-117GLK2_ORYSJ; Probable transcription factor GLK2
TrEMBLA0A0D3ELK70.0A0A0D3ELK7_9ORYZ; Uncharacterized protein
STRINGORGLA01G0079000.10.0(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.11e-12GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]