PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G08800.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 442aa    MW: 46171.1 Da    PI: 5.0219
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G08800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like51.81.9e-16209248141
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgL 41 
                      k +++WtpeLH+rFv+aveqL G++kA+P++ilelm+++ L
  OBART01G08800.1 209 KVKVDWTPELHRRFVQAVEQL-GIDKAVPSRILELMGIEIL 248
                      5689*****************.***************9866 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.34E-7207245IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-14207248IPR009057Homeodomain-like
TIGRFAMsTIGR015574.5E-14209246IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MLEVSTLRSP KADQRAGVGG HHVVGFVPAP SPADVADEVD AFIVDDSCLL EYIDFSCCDV  60
PFFHADDGDI LPDLEVDPTE LLAEFASSPD DEPPPTSAAS PGEPAAAGGA KEDVKEDGAA  120
AAADYDGSPP PPRGKKKDEE ERSSSLLEEK DAKNGGGGGD EVLSAVTTED SSAGAAKSSS  180
PSAEGHSKRK PSSSSSSAAA GKNSHGKRKV KVDWTPELHR RFVQAVEQLG IDKAVPSRIL  240
ELMGIEILFL WLKPCNGDAP KLSSRHATSR HCHGRPRMLH RCPLALFASF CHLRSEISVA  300
QEASDGEGGG GGELDAEAAD AARKWGPQAV TPGTPCMPPP LPPAAMLQRF PVPPVPGMVP  360
HPMYRPIPPP LPPQGNKLAA LQLQLDAHPS KESIDAAIGD VLVKPWLPLP LGLKPPSLDS  420
VMSELHKQGI PKVPPAASGA AG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8340420.0CT834042.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA220E01, full insert sequence.
GenBankCT8340430.0CT834043.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI203A14, full insert sequence.
GenBankCT8340440.0CT834044.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI210C09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615905.11e-124probable transcription factor GLK2 isoform X1
SwissprotQ5NAN51e-125GLK2_ORYSJ; Probable transcription factor GLK2
TrEMBLA0A0D3ELK50.0A0A0D3ELK5_9ORYZ; Uncharacterized protein
STRINGOBART01G08800.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24153886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.11e-19GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]