PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009631878.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 361aa    MW: 41351.3 Da    PI: 9.7125
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009631878.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.1e-05119142123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     y C  Cg++F +++ L++H +  H
  XP_009631878.1 119 YLCRVCGRRFYTNEKLVNHFKQiH 142
                     56*****************98766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10101.7E-764118IPR029060PIN domain-like
SuperFamilySSF576671.37E-5115145No hitNo description
PROSITE profilePS5015711.884119147IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-4119144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280121142IPR007087Zinc finger, C2H2
CDDcd061679.68E-14136271No hitNo description
PfamPF019365.2E-8191273IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10101.7E-7204259IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MLKRVKASTF IHAIRSYKRF CHFESKSNLG FGSLDSSVRT NVGIFWDLDN KPPKSFPPFD  60
AATKLKKAAG EFGVVRYTVA YANRHAFSYV PPLVRQQRKE RKTLNSLEKS GVVKVEEPYL  120
CRVCGRRFYT NEKLVNHFKQ IHEREHTKRL NQIESARGKM RVKLVAKYAM KMDKYKNAVR  180
DVLTPKVGYG LADELKRAGF WVRTVSDKPQ AADVALRNHL VDVMDKRMVE CVVLVSDDSD  240
FVEVLKEARL RCLKTVVVGD CNDGALKRTA DASFSWQEII MGKAKKEAVS VVGRWKDRDV  300
LKRLEWTYDP EVEKKQYYSE VESDDSDGLF SGEDDNKDDD ASISKEDACA WWKLDSRSGH  360
G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018622181.10.0PREDICTED: uncharacterized protein LOC104121552
TrEMBLA0A1S3Y5R00.0A0A1S3Y5R0_TOBAC; uncharacterized protein LOC107772620
STRINGXP_009631868.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-151C2H2 family protein