PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009629629.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 313aa    MW: 35571 Da    PI: 6.8975
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009629629.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.81.1e-3521142289
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssasec.eaesssssa 82 
                     +gkkdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l ++             s ss ++   ++++++++
  XP_009629629.1  21 TGKKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNAIDKLDELppwnpstidaadgS-SSGNNIvLEQQQQQQQ 114
                     79**************************************************************98888766655532.2222222333333333 PP

             TCP  83 snsssg.....................k 89 
                     +++ ++                     +
  XP_009629629.1 115 EFQLQRqleennpsggnscnsymmqthS 142
                     3111113333344444333333333330 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.4E-3221126IPR005333Transcription factor, TCP
PROSITE profilePS5136932.7852381IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MKRATGGEIV QVEGGHILRS TGKKDRHSKV YTAKGPRDRR VRLSAHTAIQ FYDVQDRLGY  60
DRPSKAVDWL IKKAKNAIDK LDELPPWNPS TIDAADGSSS GNNIVLEQQQ QQQQEFQLQR  120
QLEENNPSGG NSCNSYMMQT HSTGGETQSL GDTMKSFFPM NSETSLMNFQ NYPHEIMPRS  180
ASFQNEDLGL SLHSTTFHDQ NSNHRASSSH DHQTIFSSQN FETNYSRMAG WILPHHQQTL  240
YSPQPQGAVF PQREPLQSNF SQLIHAWEER PPMNHVHHQA EISNRHFTSD FQIPARIHGE  300
HEEPSSASPN SHH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009629629.10.0PREDICTED: transcription factor TCP4-like
TrEMBLG3BGV01e-137G3BGV0_SOLLC; TCP transcription factor 10
TrEMBLM1AJX31e-137M1AJX3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000243281e-137(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66072234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.34e-55TCP family protein