PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009628660.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 593aa    MW: 66938.1 Da    PI: 5.013
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009628660.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2991.1e-912215911374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaalklfsevsPi 90 
                     lv+lLl++Ae v++++++la++l++r    as++g+p+qRl +yf++AL++r+ rs+ +   + + ++    +        + +a+ + +++ P+
  XP_009628660.1 221 LVHLLLAAAEEVNNQQFHLASKLISRCMWVASESGNPVQRLSFYFAKALEERIDRSTGRYTCTDEDRHL---KciktmALGTNSAFLTCHQLLPF 312
                     68*****************************************************43332222222222...122222333444555689***** PP

            GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                      ++ +++  q+Ile v++++++H iDf+i  G+QW  L+qaLa++  ++   l+iT+vgs   ++ke+ e tg+ L++fA++lgvpf+f+v+  +
  XP_009628660.1 313 SQVMQFAGIQTILEHVKSAKKIHLIDFNIRSGIQWTVLMQALAEKGdSPIKLLKITAVGS---TEKEKFEVTGNTLHSFAKSLGVPFSFDVVFLS 404
                     ********************************************984455599*******...579***************************** PP

            GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                     +++d++ e+ +++ +E++aV +   l ++  ++ +le+    ++k+v+s+ P+v+v+ e ea+hns+sFl+rf+e+l +y a+fd++e  + r+s
  XP_009628660.1 405 DMKDFKKESVNIEADETVAVYCNTVLRTMIPKPDCLEN----LMKVVRSIGPTVIVIGEVEANHNSPSFLNRFIETLFFYGAFFDCFEDCMDRDS 495
                     ******************************99999999....***************************************************** PP

            GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                       r+++E +++g+ i+n+va+eg+er+ r+ +l+ Wr+ + + G+ + +lse+a  qa+l+++k++ +   +++++ + l++gWk+ p+ s+S W
  XP_009628660.1 496 PCRRTIEGVYFGEGIRNIVAAEGKERFTRNVKLQVWRAFFARLGMVEEELSESAWYQANLIVKKFAqGSCCNLHKDGKGLIIGWKGTPIHSLSIW 590
                     ******************************************************************77779************************ PP

            GRAS 374 r 374
                     +
  XP_009628660.1 591 K 591
                     8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.537195570IPR005202Transcription factor GRAS
PfamPF035144.0E-89221591IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MVICPGIGTM ANVSISNDNF TDFQGDHLKG YERNELVING VEDPWFELED CTDIDSVYSI  60
CGLINEENTS NEQVTTNLLE DQQQSISNWM QSQFSNNTDQ IKSSIEAPKD DDFQPQVLEL  120
IGHSSSEKPN PFSLASFELL NNYGRLIKKS SEENLNISNA LSYEARACNN HKLSMEEILM  180
VAGERYIQYS TQRLDGLSMF IHPYGSALSG LSIEETRDME LVHLLLAAAE EVNNQQFHLA  240
SKLISRCMWV ASESGNPVQR LSFYFAKALE ERIDRSTGRY TCTDEDRHLK CIKTMALGTN  300
SAFLTCHQLL PFSQVMQFAG IQTILEHVKS AKKIHLIDFN IRSGIQWTVL MQALAEKGDS  360
PIKLLKITAV GSTEKEKFEV TGNTLHSFAK SLGVPFSFDV VFLSDMKDFK KESVNIEADE  420
TVAVYCNTVL RTMIPKPDCL ENLMKVVRSI GPTVIVIGEV EANHNSPSFL NRFIETLFFY  480
GAFFDCFEDC MDRDSPCRRT IEGVYFGEGI RNIVAAEGKE RFTRNVKLQV WRAFFARLGM  540
VEEELSESAW YQANLIVKKF AQGSCCNLHK DGKGLIIGWK GTPIHSLSIW KFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-4423959121375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
GenBankAC2389180.0AC238918.11 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-210f9 map 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009628660.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLM1AI730.0M1AI73_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000233450.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46941842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-50RGA-like 2