PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009628238.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 218aa    MW: 24757.6 Da    PI: 9.4532
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009628238.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.82.8e-1392144254
             AP2   2 gykGVrwdkkrgr...WvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                     +y GV +++ +g    + +eIrdp  +g  +r +lg++ t+e+Aa a+++a+ k++
  XP_009628238.1  92 RYIGVKRRP-WGTfsaFSVEIRDPERRG--ARLWLGTYETPEDAALAYDQAAFKIR 144
                     699***9*9.***777779****84444..***********************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.5E-2592159IPR001471AP2/ERF domain
PROSITE profilePS5103220.50892153IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-1792154IPR016177DNA-binding domain
CDDcd000181.75E-2292155No hitNo description
Gene3DG3DSA:3.30.730.102.5E-2592154IPR001471AP2/ERF domain
PfamPF008471.7E-992144IPR001471AP2/ERF domain
PRINTSPR003672.3E-793104IPR001471AP2/ERF domain
PRINTSPR003672.3E-7119135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
FLQSIENHLL NYDSDFSEIL SPMSSSNALP NSPSSSFGSF PSAENSLDTS LWDENFEETI  60
PNLQLEEKSE SEEETKGHVV AREKTATQDW RRYIGVKRRP WGTFSAFSVE IRDPERRGAR  120
LWLGTYETPE DAALAYDQAA FKIRSSRARL NFPHLIGSNM PKPARVTARR SRTRSPEPSS  180
SSCTSSSEKG TRKRKIDLIN SIAKAKFIRH SWNLQMLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2391159469ATERF1
3gcc_A3e-2391159469ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8281490.0AB828149.1 Nicotiana tabacum ERF115 mRNA for ethylene response factor 115, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009628238.21e-141PREDICTED: ethylene-responsive transcription factor 2-like
TrEMBLS0BDM41e-124S0BDM4_TOBAC; Ethylene response factor 115
STRINGXP_009628238.11e-159(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-30ethylene-responsive element binding factor 13