PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009626387.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 526aa    MW: 57192.1 Da    PI: 8.8172
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009626387.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-0596118123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F r  nL+ H r H
  XP_009626387.1  96 FVCEICNKGFQRDQNLQLHRRGH 118
                     89*******************88 PP

2zf-C2H212.70.00039172194123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k +  +s+ k H +t+
  XP_009626387.1 172 WKCEKCSKKYAVQSDWKAHSKTC 194
                     58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-595118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.64E-695118No hitNo description
SMARTSM003550.01796118IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94996118IPR007087Zinc finger, C2H2
PfamPF121718.5E-596118IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
SMARTSM00355210137167IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.7E-4160193IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.64E-6167192No hitNo description
SMARTSM00355140172192IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MIKGFMNQQN QPVVVEENMS NLTSASGEAA SVSSCNRNDN NTTGGIYPPQ YNFAPPNQQI  60
QAQHQIKKKR NQPGNPDPGA EVIALSPKTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL  120
PWKLKQRTSK EIRKKVYVCP EPSCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCEKCSKK  180
YAVQSDWKAH SKTCGTKEYR CDCGTLFSRR DSFITHRAFC DALAEESARA ITGNPILPSQ  240
QSQFNSHEFP AAFSLKKEQQ TGFNLRPEIP PWLMTCQPLV GGGGPGPGPP PPQPIDLSSS  300
IFQSTRFEQD YTPNHGQDLN PNPSLNFSST GSLPSPHISA TALLQKAAQM GATMSNKSST  360
VSAAATGPSP TMLMRPHQFH VSAAAAESVS NNATDFGLNL SSREDLTTGF FNSLASYGNK  420
AATITAAAVA TVPVTGPLTS APSPTSFIMT SFSSANTTGF EGSNFEDEFG GIGILNSKKG  480
NDGNDDMTKD FLGLRPLSHS DIFNIAGLVN TTTIENQSQN HKTWQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35168229364Zinc finger protein JACKDAW
5b3h_F2e-35168229364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122134KLKQRTSKEIRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0136590.0BT013659.1 Lycopersicon esculentum clone 132478R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009626387.10.0PREDICTED: protein indeterminate-domain 7-like
RefseqXP_009626389.10.0PREDICTED: protein indeterminate-domain 7-like
SwissprotQ8H1F51e-125IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A1S4ARV00.0A0A1S4ARV0_TOBAC; protein indeterminate-domain 7-like
STRINGXP_009626387.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-111indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]