PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009625307.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 296aa    MW: 32456.9 Da    PI: 7.8323
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009625307.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like109.71.5e-344296155
         G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl
  XP_009625307.1 42 KPRLRWTAELHERFVDAVTQLGGPDKATPKTIMKAMGVKGLTLYHLKSHLQKYRL 96
                    79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.2543999IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.9E-333997IPR009057Homeodomain-like
SuperFamilySSF466891.45E-174198IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-244297IPR006447Myb domain, plants
PfamPF002492.4E-94495IPR001005SANT/Myb domain
PfamPF143797.1E-27140186IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MKMYSALSFC MEGNGSGGGS GGVGEYQNML GDACLVLTAD HKPRLRWTAE LHERFVDAVT  60
QLGGPDKATP KTIMKAMGVK GLTLYHLKSH LQKYRLGKQS KEAAENYKDA SCVAENQDTS  120
SSASGSSKVV TQDVNDSGYQ VTEAFRVQME VQRRLHEQLE VQRHVQLRIE AQGKYLQTIL  180
EKACKALNYK AMASPDLDAA REQLSELAIK VESDSDGIVT VPSLPEVVTS FENKNAPNMP  240
ARIGDCLIDV CFPSNRSPVS PTSIGALKKR PRVFANADAL PAENNMRQVQ WMMTNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-204298258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-204298258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A7e-204298157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-204298157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-204298157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-204298157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-204298258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-204298258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-204298258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-204298258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-204298258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-204298258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009625307.10.0PREDICTED: protein PHR1-LIKE 3-like isoform X1
SwissprotQ94A571e-104PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBLA0A1S4DDU90.0A0A1S4DDU9_TOBAC; myb family transcription factor APL-like isoform X1
STRINGXP_009625307.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37912344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.11e-101G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]