PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009624600.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 186aa    MW: 21347 Da    PI: 5.8315
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009624600.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11e-1861112256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     +y GVr ++ + +++AeIrd + ng   r++lg+f+taeeAa a+++a+ +++g+
  XP_009624600.1  61 HYIGVRKRP-WRKYAAEIRDSTRNG--IRVWLGTFDTAEEAAMAYDQAAFSMRGA 112
                     799******.**********44465..*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.16E-2860120No hitNo description
PROSITE profilePS5103220.94361119IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-2261121IPR016177DNA-binding domain
PfamPF008475.8E-1361111IPR001471AP2/ERF domain
SMARTSM003801.0E-3261125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-2961120IPR001471AP2/ERF domain
PRINTSPR003677.4E-96273IPR001471AP2/ERF domain
PRINTSPR003677.4E-985101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MNSSSCSELS VDSDWPPLFL NTVNVEEQKM ISSEKLSLEN DFSEEIKSEK VQKLPNKEEK  60
HYIGVRKRPW RKYAAEIRDS TRNGIRVWLG TFDTAEEAAM AYDQAAFSMR GAQTCLNFPV  120
ERVQESLREF KCSSKDGSTP VEVIKEKHKK RHSKGKRKQT KEENVFVFED LGSDLLDELL  180
SECSTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2760120464ATERF1
3gcc_A1e-2760120464ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016464423.11e-114PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y93e-49ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A1S3ZJN31e-112A0A1S3ZJN3_TOBAC; ethylene-responsive transcription factor 1B-like
STRINGXP_009624600.11e-136(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.15e-31ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]