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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009624544.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | TCP | ||||||||
Protein Properties | Length: 309aa MW: 34646.7 Da PI: 7.433 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 113.8 | 2.3e-35 | 21 | 118 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssaseceaesssssa 82 +g+kdrhsk++T++g+RdRR+Rlsa++a++f+d+qd+LG+dk+sk+++WL+++ak ai++l+++ + ++++++ + XP_009624544.1 21 TGQKDRHSKVYTAKGPRDRRIRLSALTAIQFYDMQDRLGYDKPSKAVDWLIKKAKNAIDKLVELptwnpsddavlkniP--------TSTEREVG 107 799*************************************************************655544444443221........11111111 PP TCP 83 snsssg....k 89 s+ +++ + XP_009624544.1 108 SSGNIAlephQ 118 11111122220 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 8.3E-34 | 21 | 127 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.119 | 23 | 81 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MKRATEGEIV QVEGGRILRS TGQKDRHSKV YTAKGPRDRR IRLSALTAIQ FYDMQDRLGY 60 DKPSKAVDWL IKKAKNAIDK LVELPTWNPS DDAVLKNIPT STEREVGSSG NIALEPHQQS 120 KFSSRFLLQR QLAENPTSDT SYVMPAVEPE TSSVADTSKS FFPINSGTSL MNLLSFPHEA 180 MSRDSIQTED LGLSLHTNLH DQNSNHSANL VNFEANYNPR MANWIPHQQF LSQGGIFSQR 240 EPLQSNFSRL ISHAWELQQP MASAEHKSSI SNSYFNGHFQ FPSRLIQGEE DINGVICIKP 300 SSGSSSFQH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009624544.1 | 0.0 | PREDICTED: transcription factor TCP4-like isoform X1 | ||||
Refseq | XP_009624545.1 | 0.0 | PREDICTED: transcription factor TCP4-like isoform X1 | ||||
Swissprot | Q8LPR5 | 5e-49 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | M1AJX3 | 3e-91 | M1AJX3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400024328 | 8e-91 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6607 | 22 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 3e-50 | TCP family protein |