PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v1.0, v2.0, v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009624544.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 309aa MW: 34646.7 Da PI: 7.433

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009624544.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	113.8	2.3e-35	21	118	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssaseceaesssssa 82 +g+kdrhsk++T++g+RdRR+Rlsa++a++f+d+qd+LG+dk+sk+++WL+++ak ai++l+++ + ++++++ + XP_009624544.1 21 TGQKDRHSKVYTAKGPRDRRIRLSALTAIQFYDMQDRLGYDKPSKAVDWLIKKAKNAIDKLVELptwnpsddavlkniP--------TSTEREVG 107 799*************************************************************655544444443221........11111111 PP TCP 83 snsssg....k 89 s+ +++ + XP_009624544.1 108 SSGNIAlephQ 118 11111122220 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	8.3E-34	21	127	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	32.119	23	81	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MKRATEGEIV QVEGGRILRS TGQKDRHSKV YTAKGPRDRR IRLSALTAIQ FYDMQDRLGY 60 DKPSKAVDWL IKKAKNAIDK LVELPTWNPS DDAVLKNIPT STEREVGSSG NIALEPHQQS 120 KFSSRFLLQR QLAENPTSDT SYVMPAVEPE TSSVADTSKS FFPINSGTSL MNLLSFPHEA 180 MSRDSIQTED LGLSLHTNLH DQNSNHSANL VNFEANYNPR MANWIPHQQF LSQGGIFSQR 240 EPLQSNFSRL ISHAWELQQP MASAEHKSSI SNSYFNGHFQ FPSRLIQGEE DINGVICIKP 300 SSGSSSFQH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009624544.1	0.0	PREDICTED: transcription factor TCP4-like isoform X1
Refseq	XP_009624545.1	0.0	PREDICTED: transcription factor TCP4-like isoform X1
Swissprot	Q8LPR5	5e-49	TCP4_ARATH; Transcription factor TCP4
TrEMBL	M1AJX3	3e-91	M1AJX3_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400024328	8e-91	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6607	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.3	3e-50	TCP family protein