PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009624544.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 309aa    MW: 34646.7 Da    PI: 7.433
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009624544.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP113.82.3e-3521118289
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssaseceaesssssa 82 
                     +g+kdrhsk++T++g+RdRR+Rlsa++a++f+d+qd+LG+dk+sk+++WL+++ak ai++l+++              +        ++++++ +
  XP_009624544.1  21 TGQKDRHSKVYTAKGPRDRRIRLSALTAIQFYDMQDRLGYDKPSKAVDWLIKKAKNAIDKLVELptwnpsddavlkniP--------TSTEREVG 107
                     799*************************************************************655544444443221........11111111 PP

             TCP  83 snsssg....k 89 
                     s+ +++    +
  XP_009624544.1 108 SSGNIAlephQ 118
                     11111122220 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.3E-3421127IPR005333Transcription factor, TCP
PROSITE profilePS5136932.1192381IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MKRATEGEIV QVEGGRILRS TGQKDRHSKV YTAKGPRDRR IRLSALTAIQ FYDMQDRLGY  60
DKPSKAVDWL IKKAKNAIDK LVELPTWNPS DDAVLKNIPT STEREVGSSG NIALEPHQQS  120
KFSSRFLLQR QLAENPTSDT SYVMPAVEPE TSSVADTSKS FFPINSGTSL MNLLSFPHEA  180
MSRDSIQTED LGLSLHTNLH DQNSNHSANL VNFEANYNPR MANWIPHQQF LSQGGIFSQR  240
EPLQSNFSRL ISHAWELQQP MASAEHKSSI SNSYFNGHFQ FPSRLIQGEE DINGVICIKP  300
SSGSSSFQH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009624544.10.0PREDICTED: transcription factor TCP4-like isoform X1
RefseqXP_009624545.10.0PREDICTED: transcription factor TCP4-like isoform X1
SwissprotQ8LPR55e-49TCP4_ARATH; Transcription factor TCP4
TrEMBLM1AJX33e-91M1AJX3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000243288e-91(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66072234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.33e-50TCP family protein