PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009623268.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 269aa    MW: 29545.8 Da    PI: 8.9254
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009623268.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00021100122123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C + F ++  L  H++ H
  XP_009623268.1 100 FSCNYCQRKFYSSQALGGHQNAH 122
                     89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.08E-696128No hitNo description
PROSITE profilePS5015711.427100127IPR007087Zinc finger, C2H2
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MKFPTSDNSC TSLKVAAPFL SPTTVLSNFP NKLLSQQKME SQSTEELSQN QTIDDQENND  60
LILDLSLCNT DHGSKSNIQT SSSDPNSRGN NINETEPRVF SCNYCQRKFY SSQALGGHQN  120
AHKRERTMAK RGQKISSTAA NFGYDKYSSM ASLPLHGSFN RSLGIQVHSM IHKPSSPFGA  180
PLYGHPGWSI RRPIDQQPAI GRLAPPDCYN YNGGTSSVGG AARFDNNIQK FPSVVDGISA  240
YRWDSGGGPH ISKSNNQEEL KKLDLSLKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009623268.10.0PREDICTED: zinc finger protein 3
TrEMBLA0A1S3ZJR70.0A0A1S3ZJR7_TOBAC; zinc finger protein 3-like
STRINGXP_009623268.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58272233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.19e-41zinc finger protein 3