PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009621926.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 218aa    MW: 23645.2 Da    PI: 8.1003
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009621926.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.9e-056183123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C++C++ F ++  L  H++ H
  XP_009621926.1 61 YECQYCSREFANSQALGGHQNAH 83
                    99******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.45E-65888No hitNo description
Gene3DG3DSA:3.30.160.601.1E-45987IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.1756188IPR007087Zinc finger, C2H2
PfamPF139121.0E-56185IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MAELEFQSKH GTYNPTNNGR LKLFGFNMST EEDQEQEVDS TKTSSASPES GSFPASDGRK  60
YECQYCSREF ANSQALGGHQ NAHKKERQQL KRAQIQASRN AYMRNPIISA FASPSHLLTP  120
PGTMVVPASS PSWVYVPRAA PPFHGCVFPT SNSVRGVGNF QYTGGVVESS LASVGPQHVK  180
AHSGRVDVNN GPSLSKLSRV DIGPNFDDPF GLDLQLSL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for the initiation of inflorescence trichomes in response to gibberellin and cytokinin. Acts upstream of GIS, GIS2, ZFP8, and the trichome initiation factors GL1 and GL3. Binds the promoter region of GIS and GIS2, which may be direct targets of GIS3. {ECO:0000269|PubMed:25640859}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009621926.11e-163PREDICTED: zinc finger protein 6-like
RefseqXP_016489116.11e-163PREDICTED: zinc finger protein 6-like
SwissprotQ9C9H19e-57GIS3_ARATH; Zinc finger protein GIS3
TrEMBLA0A1S4BJQ11e-161A0A1S4BJQ1_TOBAC; zinc finger protein 6-like
STRINGXP_009621926.11e-162(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29941419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.14e-14C2H2 family protein
Publications ? help Back to Top
  1. Sun L, et al.
    GLABROUS INFLORESCENCE STEMS3 (GIS3) regulates trichome initiation and development in Arabidopsis.
    New Phytol., 2015. 206(1): p. 220-30
    [PMID:25640859]