PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009621246.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 146aa    MW: 16714.6 Da    PI: 8.6482
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009621246.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.4e-201667256
             AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr..krfslgkfgtaeeAakaaiaarkklege 56
                    +y+GVr+++ +g+++AeIrd       r   r +lg+f+taeeAa+a+++a+ +l+g+
  XP_009621246.1 16 KYRGVRRRP-WGKFAAEIRDtT-----RpgSRQWLGTFDTAEEAARAYDRAAFNLRGH 67
                    8********.**********33.....3559*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.56E-311675No hitNo description
SuperFamilySSF541713.4E-231675IPR016177DNA-binding domain
PROSITE profilePS5103223.421674IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-301676IPR001471AP2/ERF domain
SMARTSM003805.6E-361680IPR001471AP2/ERF domain
PfamPF008474.0E-141667IPR001471AP2/ERF domain
PRINTSPR003673.4E-111728IPR001471AP2/ERF domain
PRINTSPR003673.4E-114056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MQEKESSNNK EKEEVKYRGV RRRPWGKFAA EIRDTTRPGS RQWLGTFDTA EEAARAYDRA  60
AFNLRGHLAT LNFPNEYYNQ LQYPPLYYRN SISSPTNVAS NPRGSLENGS SSSLTGKTKE  120
IIELECLDNS VLEELLCAED SKMKRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-301313111114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009621246.21e-105PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC56e-40ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A1S3XL631e-104A0A1S3XL63_TOBAC; ethylene-responsive transcription factor ERF098-like
STRINGXP_009621246.11e-105(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.18e-30ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]