PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009620960.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 171aa    MW: 19109.4 Da    PI: 8.1995
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009620960.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.78.1e-201665255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +ykGVr +k +g+WvAe+r p++   r r++lg+++taeeAa+a++aa  +l+g
  XP_009620960.1 16 RYKGVRMRK-WGKWVAEVRQPKS---RERIWLGSYDTAEEAARAYDAAVVCLRG 65
                    6******99.*******999854...4*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.27E-311675No hitNo description
SuperFamilySSF541711.83E-221674IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.6E-311674IPR001471AP2/ERF domain
PfamPF008472.7E-131665IPR001471AP2/ERF domain
PROSITE profilePS5103223.381673IPR001471AP2/ERF domain
SMARTSM003805.4E-361679IPR001471AP2/ERF domain
PRINTSPR003672.3E-101728IPR001471AP2/ERF domain
PRINTSPR003672.3E-103955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MVKPKGNKEK KDNGERYKGV RMRKWGKWVA EVRQPKSRER IWLGSYDTAE EAARAYDAAV  60
VCLRGPSATI NFPNNPPLIP SSAANCDQQL SPSQIQVAAS RHARRVVCES AVVDSRLPAV  120
ETVFFRDNNS EFGCSSYNVD CYNLATTDKT SSGDGEVLHD DLFDSARMWT F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1816741473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009620960.11e-126PREDICTED: ethylene-responsive transcription factor ERF016-like
SwissprotQ9C5911e-34ERF16_ARATH; Ethylene-responsive transcription factor ERF016
TrEMBLA0A1S4CSL51e-124A0A1S4CSL5_TOBAC; ethylene-responsive transcription factor ERF016-like
STRINGXP_009620960.11e-126(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.14e-27ERF family protein