PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009620873.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 395aa    MW: 44184.1 Da    PI: 9.5143
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009620873.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00051343362323
                     ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                     C  Cgk+F  ++ L++H++++
  XP_009620873.1 343 CAQCGKPF-KPEKLHTHMKSC 362
                     9*******.**********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF061367.9E-4115173IPR010369Protein of unknown function DUF966
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MEAQTQGGAE VRRLHIIYFL SRKGRIEHPH LIRVHHFSRN GIRLRDVKRW LGELRGKDMP  60
ESFAWSYKRK YKTGYVWQDL LDEDLITPIS DNEYVLKGSE VSKDVKCGEK GVLATMQKEQ  120
TKQEDHIQDP FMDSSKKTPS EIEEESQNIA SEPSTLTTDS PELQEEEEKD SENKNIQEKV  180
NNFENNSFSS SSSFGSKKTK MKTEDHVKEN GEKISTQSSE KPTKNPSFNK SRSYSNGASS  240
IFRNLITCGA VDTNDSGIVP IRKNRSSFSS SGEKAVSFSS EICRAEKVGG SQRIFGTAWN  300
QQHQHTNGRK SCDGAYSSSK NKNEFGSRRS VSANYKPVNG PNCAQCGKPF KPEKLHTHMK  360
SCKGMKALAK GANSVTSATE KTSKVDSVSG TFLTH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009620873.10.0PREDICTED: protein UPSTREAM OF FLC isoform X3
TrEMBLA0A1S4BXP50.0A0A1S4BXP5_TOBAC; protein UPSTREAM OF FLC-like isoform X3
STRINGXP_009620871.10.0(Nicotiana tomentosiformis)