PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009620710.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 520aa    MW: 57073.7 Da    PI: 9.612
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009620710.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-0590112123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F r  nL+ H r H
  XP_009620710.1  90 FVCEICNKGFQRDQNLQLHRRGH 112
                     89*******************88 PP

2zf-C2H215.64.7e-05166188123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k +  +s+ k H++t+
  XP_009620710.1 166 WKCDKCSKKYAVQSDWKAHQKTC 188
                     58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-589112IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.13E-889112No hitNo description
PROSITE profilePS5015710.94990112IPR007087Zinc finger, C2H2
SMARTSM003550.01790112IPR015880Zinc finger, C2H2-like
PfamPF121718.3E-590112IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
SMARTSM0035577131161IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-5154187IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.13E-8161187No hitNo description
SMARTSM0035594166186IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MSNISGEEGS FSSGNTGEEV QKHNQAAHLK TSNNISSITS TSNGSSSQSQ QQQNKHQPLA  60
KKKRNLPGTP DPNAEVIALS PTTLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ  120
RTTTEVRKRV YICPEPTCVH HNPARALGDL TGIKKHYSRK HGEKKWKCDK CSKKYAVQSD  180
WKAHQKTCGT REYKCDCGTI FSRRDSFITH RAFCDALAEE NNKVNQSLMN NMGPNLQSGQ  240
MHVLMSSNAS LGLSDFNNFD PKTPLKSLPQ ELLPIPFKSM NNNMAAGGMF STTSGNLFGS  300
PRSVASSSSG LQLSSNIPSN FNYLQDSSKN GTVQGQAPMS ATALLQKAAQ MGATASSSIN  360
SPMMQKSFVT SAMAGPYVSP SPYENFQTQP DNNRPSLAAV MNDMGMYSGI LMSNDQNING  420
GFIKNVAEHD QENNNTNDSS SVIRVRNQST VFGHNGNNDM LTVDFLGVGG SSRPPSLHEQ  480
QRLEAAINQQ RMQASAINPF HQQNISHGNN SAMEKPIWDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-34162231371Zinc finger protein JACKDAW
5b3h_F1e-34162231371Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00403DAPTransfer from AT3G50700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-133HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009620710.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9SCQ61e-116IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A1S4AEF80.0A0A1S4AEF8_TOBAC; protein indeterminate-domain 2-like
STRINGXP_009620710.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-105indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]