PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009620302.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ZF-HD
Protein Properties Length: 263aa    MW: 29208.5 Da    PI: 8.6707
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009620302.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer112.42.3e-3549106359
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                     +v+YkeClkNhAas+GghavDGCgEfmps++++ +++++lkCaACgCHRnFHRre++e
  XP_009620302.1  49 AVTYKECLKNHAASIGGHAVDGCGEFMPSPDSTpSNPTSLKCAACGCHRNFHRREPAE 106
                     799******************************9********************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.0E-2950104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-2050110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.3E-3151103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.24352103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.95E-19150220IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-29153221IPR009057Homeodomain-like
TIGRFAMsTIGR015652.3E-24159216IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MELTCGSNPT KSTPDSENDT PPLIKPLSFS NGILKNHHFY HHQQPPSAAV TYKECLKNHA  60
ASIGGHAVDG CGEFMPSPDS TPSNPTSLKC AACGCHRNFH RREPAEDSSP THFPSHFINF  120
RHHILPPIRR FSPSSSSSPP PPFQPQPITP KVEHNPSGRK RFRTKFTQQQ KEKMHSFSEK  180
LGWKLQKCDE AKVEEFCNEV GVGKGVLRVW MHNNKNTFAK KEELQNGNNN SNGFNIHGSS  240
SNEDHNNCGL HLHISTNGSS SSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A8e-221602171875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009620302.10.0PREDICTED: zinc-finger homeodomain protein 9-like
SwissprotQ9LHF03e-58ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBLA0A1S3YHU20.0A0A1S3YHU2_TOBAC; zinc-finger homeodomain protein 9-like
STRINGXP_009620302.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.13e-51homeobox protein 30
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]