PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009618167.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 514aa    MW: 58308.1 Da    PI: 5.9741
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009618167.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS342.85.6e-1051355133374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     + Lle  +a+++++ +++q+l++ l+el+sp+gd+ q+la+yf++AL +r+++s++++y++l + ++++ + +++ + +  f+evsP+ +f+h++
  XP_009618167.1 135 DILLETSRAIADKNSTRVQKLMWMLNELSSPYGDTEQKLASYFLQALFSRMTDSGERCYRTLVSASDKTCSFESTRKLVLKFQEVSPWTTFGHVA 229
                     6799**********************************************************8888876555555455555************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvak.rl 186
                      N aI+ea+ege+++HiiD++ ++++QWp+Ll+aLa+R++++p+lR+T+v+   ++      ++ ++e+g+r++kfA+ +gvpf+fnv+++  +l
  XP_009618167.1 230 SNGAIMEAFEGESKLHIIDISNTYCTQWPTLLEALATRTDETPHLRLTTVVVGGATggtaaVQKVMKEIGSRMEKFARLMGVPFKFNVIHHMgNL 324
                     ************************************************9998666678999999************************96656** PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysalfdsleaklpr 277
                     ++l++ +L++k++Eala+n++ +lh++     +  ++rd +++l+++l+P++v++ve+ead++ +    +F+++f e+l++  + f+sl+ ++p+
  XP_009618167.1 325 SELDVGALDIKEDEALAINCIGALHSVS----PAGNRRDYLISLFRRLQPRIVTIVEEEADLDVGvdgfDFVKGFQECLRWIRVYFESLDDSFPK 415
                     ***************************8....777889*********************99865556669************************* PP

            GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvs 369
                     +s+er ++Er+  gr+iv+++ac  +e+ er+et +kW++rl++ GF+pv +s+++ +++++llr++k +g+++     +s+ ++l Wk++p+v+
  XP_009618167.1 416 TSNERLMLERQ-AGRSIVDLLACPPSESMERRETGAKWSHRLHAGGFSPVLYSDEVCDDVRALLRRYK-EGWSMTqcgGDSAGIFLSWKEQPVVW 508
                     ***********.********************************************************.7766663446799999********** PP

            GRAS 370 vSaWr 374
                     +SaW+
  XP_009618167.1 509 ASAWK 513
                     ****8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.441107491IPR005202Transcription factor GRAS
PfamPF035141.9E-102135513IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009956Biological Processradial pattern formation
GO:0045930Biological Processnegative regulation of mitotic cell cycle
GO:0048366Biological Processleaf development
GO:0055072Biological Processiron ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MDTLFRLVSL QQQQQQSDQS FNSSRTSSSS RSSNKQNTYT TYNYPSHHNQ EDEECFNFFM  60
DEDDFSSNSS SKHNNYPPPY HYQHHHQQQQ FSNTPTPTTT SSTPTQSHQY YDQFSPARDL  120
NLEFGSSFSG KWATDILLET SRAIADKNST RVQKLMWMLN ELSSPYGDTE QKLASYFLQA  180
LFSRMTDSGE RCYRTLVSAS DKTCSFESTR KLVLKFQEVS PWTTFGHVAS NGAIMEAFEG  240
ESKLHIIDIS NTYCTQWPTL LEALATRTDE TPHLRLTTVV VGGATGGTAA VQKVMKEIGS  300
RMEKFARLMG VPFKFNVIHH MGNLSELDVG ALDIKEDEAL AINCIGALHS VSPAGNRRDY  360
LISLFRRLQP RIVTIVEEEA DLDVGVDGFD FVKGFQECLR WIRVYFESLD DSFPKTSNER  420
LMLERQAGRS IVDLLACPPS ESMERRETGA KWSHRLHAGG FSPVLYSDEV CDDVRALLRR  480
YKEGWSMTQC GGDSAGIFLS WKEQPVVWAS AWKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-311375138375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009618167.10.0PREDICTED: protein SHORT-ROOT
RefseqXP_009618166.10.0PREDICTED: protein SHORT-ROOT
RefseqXP_009618165.10.0PREDICTED: protein SHORT-ROOT
SwissprotQ9SZF70.0SHR_ARATH; Protein SHORT-ROOT
TrEMBLK4BD330.0K4BD33_SOLLC; Uncharacterized protein
STRINGSolyc02g092370.1.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.10.0GRAS family protein