PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009618056.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 410aa    MW: 46525.6 Da    PI: 7.1892
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009618056.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS431.27.8e-132334102374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalkl....fsevsPi 90 
                     ++lL++cAe +s +d+++a++lL+ ls+++sp gd+++Rl++ ft+AL+ rl+r  s+  + l+p+++s+    s +  a l+     +++v+P+
  XP_009618056.1  33 RQLLISCAELISRSDFSAANRLLTILSTNSSPFGDSTERLVHQFTRALSIRLNRYISSATNFLTPNASSNVVesS-NDSALLQSsylsLNQVTPF 126
                     89****************************************************999999999888877544432.222222223556******* PP

            GRAS  91 lkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl..v 182
                     ++fs+ltaNqaIlea++ + +++Hi+Dfdi++G+QWp+L+qaLa+R  +pp+lRiTg g+    + ++l++tg+rLakfA++lg++f+f++l  +
  XP_009618056.1 127 IRFSQLTANQAILEAINDNqQAIHIVDFDINHGVQWPPLMQALADR-YPPPTLRITGTGN----DLDTLRRTGDRLAKFAHSLGLRFQFHPLliT 216
                     ****************998799***********************9.999**********....***************************9643 PP

            GRAS 183 akrledlel...eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                      ++ +d ++   +++ + p+E+la+n+v+ lhrll+++  l+     +L+ +ks++Pkvv+++e+ea+hn++ Fl+rf+eal+yy+a+fdslea+
  XP_009618056.1 217 NNNDNDHDPsiiSSIVLLPDETLAINCVFYLHRLLKDREMLRI----FLHRIKSMNPKVVTLAEREANHNHPLFLQRFVEALDYYAAVFDSLEAT 307
                     3355555551115556777****************99999999....************************************************ PP

            GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve..eesgslvlgWkdrp 366
                     lp+ s+er++vE++++grei ++va+eg++rrerhe++++W+ +l+++GF++v+ls +a +qaklllr ++ s+gy++   + s+s++lgW+++p
  XP_009618056.1 308 LPPSSRERMTVEQVWFGREIIDIVAAEGDKRRERHERFRSWEVMLRSCGFSNVALSPFALSQAKLLLRLHYpSEGYQLSvsSTSNSFFLGWQNQP 402
                     ****************************************************************************98855779*********** PP

            GRAS 367 LvsvSaWr 374
                     L+s+S+Wr
  XP_009618056.1 403 LFSISSWR 410
                     *******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.1326387IPR005202Transcription factor GRAS
PfamPF035142.7E-12933410IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010223Biological Processsecondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MLGSFGSSSQ SHDEEADDQR RRCSSTSPAI QIRQLLISCA ELISRSDFSA ANRLLTILST  60
NSSPFGDSTE RLVHQFTRAL SIRLNRYISS ATNFLTPNAS SNVVESSNDS ALLQSSYLSL  120
NQVTPFIRFS QLTANQAILE AINDNQQAIH IVDFDINHGV QWPPLMQALA DRYPPPTLRI  180
TGTGNDLDTL RRTGDRLAKF AHSLGLRFQF HPLLITNNND NDHDPSIISS IVLLPDETLA  240
INCVFYLHRL LKDREMLRIF LHRIKSMNPK VVTLAEREAN HNHPLFLQRF VEALDYYAAV  300
FDSLEATLPP SSRERMTVEQ VWFGREIIDI VAAEGDKRRE RHERFRSWEV MLRSCGFSNV  360
ALSPFALSQA KLLLRLHYPS EGYQLSVSST SNSFFLGWQN QPLFSISSWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-62324104375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9355810.0EU935581.1 Nicotiana tabacum lateral suppressor protein (Ls) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009618056.10.0PREDICTED: scarecrow-like protein 18
RefseqXP_016499877.10.0PREDICTED: scarecrow-like protein 18
SwissprotQ9ZWC51e-132SCL18_ARATH; Scarecrow-like protein 18
TrEMBLB5M4A50.0B5M4A5_TOBAC; Lateral suppressor protein
STRINGPGSC0003DMT4000572650.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112982225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-134GRAS family protein